miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 3' -64.3 NC_005264.1 + 3447 0.66 0.570223
Target:  5'- aGGGGUccGCCGCCCgUGGcGCCC-GGUg -3'
miRNA:   3'- -CCCCG--CGGCGGGaGCUcCGGGaUCAg -5'
24383 3' -64.3 NC_005264.1 + 3750 0.71 0.305805
Target:  5'- cGGGGCcucuuGCCGCCggggCGcugcGGGCCCUuGGUCg -3'
miRNA:   3'- -CCCCG-----CGGCGGga--GC----UCCGGGA-UCAG- -5'
24383 3' -64.3 NC_005264.1 + 5148 0.69 0.362476
Target:  5'- gGGGGCGUCGCCgUCGucgucggugccGGCCUc-GUCg -3'
miRNA:   3'- -CCCCGCGGCGGgAGCu----------CCGGGauCAG- -5'
24383 3' -64.3 NC_005264.1 + 6484 0.69 0.401427
Target:  5'- cGGGGUGCgCGgCCaUCGAGGgCCgguagccGGUCu -3'
miRNA:   3'- -CCCCGCG-GCgGG-AGCUCCgGGa------UCAG- -5'
24383 3' -64.3 NC_005264.1 + 7582 0.69 0.408716
Target:  5'- -cGGCuCCGCCCcuaaaccUCGcGGGCUCUGGUCu -3'
miRNA:   3'- ccCCGcGGCGGG-------AGC-UCCGGGAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 9513 0.71 0.286376
Target:  5'- aGGcGCGgCGCCCUCGAggGGCCCUcGa- -3'
miRNA:   3'- cCC-CGCgGCGGGAGCU--CCGGGAuCag -5'
24383 3' -64.3 NC_005264.1 + 10537 0.72 0.256177
Target:  5'- -cGGCGCCGCCCUCaGGGGCgCggaUCg -3'
miRNA:   3'- ccCCGCGGCGGGAG-CUCCGgGaucAG- -5'
24383 3' -64.3 NC_005264.1 + 11077 0.66 0.53067
Target:  5'- cGGGUGCCGCCCccucaaugcaaaUGAGGUCacaUGGUa -3'
miRNA:   3'- cCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5'
24383 3' -64.3 NC_005264.1 + 16099 0.66 0.579755
Target:  5'- cGGGUccGCCGCCCUCGuucGaCCCUAa-- -3'
miRNA:   3'- cCCCG--CGGCGGGAGCuc-C-GGGAUcag -5'
24383 3' -64.3 NC_005264.1 + 18528 0.66 0.579755
Target:  5'- gGGGGCGCCGucuccCCCUgaGGGcGCgCCggcGUCa -3'
miRNA:   3'- -CCCCGCGGC-----GGGAg-CUC-CG-GGau-CAG- -5'
24383 3' -64.3 NC_005264.1 + 18642 0.7 0.346189
Target:  5'- uGGGGUGCCGCCCaccguaugcuaaUGAGGUCacaUGGUg -3'
miRNA:   3'- -CCCCGCGGCGGGa-----------GCUCCGGg--AUCAg -5'
24383 3' -64.3 NC_005264.1 + 26819 0.67 0.468975
Target:  5'- uGGGccGCGCCGCUCUUGAGcCCCcAGa- -3'
miRNA:   3'- -CCC--CGCGGCGGGAGCUCcGGGaUCag -5'
24383 3' -64.3 NC_005264.1 + 32095 0.73 0.22344
Target:  5'- gGGGGCGCCGCCCcaUCGAuGCaaaUUAuGUCa -3'
miRNA:   3'- -CCCCGCGGCGGG--AGCUcCGg--GAU-CAG- -5'
24383 3' -64.3 NC_005264.1 + 40198 0.66 0.532533
Target:  5'- --cGCGcCCGCCCUCGcGGCCCc---- -3'
miRNA:   3'- cccCGC-GGCGGGAGCuCCGGGaucag -5'
24383 3' -64.3 NC_005264.1 + 41059 0.71 0.299219
Target:  5'- uGGGCGCCGUCCUUG-GGUCauguGUCc -3'
miRNA:   3'- cCCCGCGGCGGGAGCuCCGGgau-CAG- -5'
24383 3' -64.3 NC_005264.1 + 60321 0.67 0.477827
Target:  5'- cGGGGCGUaugggaucguCGagaUCUUGAGGCCCUcGUa -3'
miRNA:   3'- -CCCCGCG----------GCg--GGAGCUCCGGGAuCAg -5'
24383 3' -64.3 NC_005264.1 + 67763 0.67 0.495774
Target:  5'- aGGGCGUCGCUUaUCGccAGGCCCaucauGUCu -3'
miRNA:   3'- cCCCGCGGCGGG-AGC--UCCGGGau---CAG- -5'
24383 3' -64.3 NC_005264.1 + 69607 0.66 0.540942
Target:  5'- aGGGCGCCGCCCggCGugagaacgacAGGCUauuggggCUGGg- -3'
miRNA:   3'- cCCCGCGGCGGGa-GC----------UCCGG-------GAUCag -5'
24383 3' -64.3 NC_005264.1 + 69680 0.67 0.466335
Target:  5'- uGGGGCcuugguucuccgcgGUugCGUCCUgGAGGUUCUAGUCc -3'
miRNA:   3'- -CCCCG--------------CG--GCGGGAgCUCCGGGAUCAG- -5'
24383 3' -64.3 NC_005264.1 + 71105 0.69 0.401427
Target:  5'- ----aGCCGCCCUC--GGCCCUGGUg -3'
miRNA:   3'- ccccgCGGCGGGAGcuCCGGGAUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.