Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24383 | 5' | -56.6 | NC_005264.1 | + | 20230 | 0.66 | 0.88814 |
Target: 5'- gUGGccccGCGCGUGACgggugggCAGGGguuGCGGCGCg -3' miRNA: 3'- -ACC----UGUGUACUGg------GUUCC---UGCCGCGg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 18529 | 0.66 | 0.88814 |
Target: 5'- gGGGCGCcgucuCCCccuGAGGGCG-CGCCg -3' miRNA: 3'- aCCUGUGuacu-GGG---UUCCUGCcGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 150686 | 0.66 | 0.901164 |
Target: 5'- -cGACagACGaGACCCAGcaacGGGCaGCGCCg -3' miRNA: 3'- acCUG--UGUaCUGGGUU----CCUGcCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 48025 | 0.66 | 0.901164 |
Target: 5'- uUGGcACACGUGugCCAgaagcugucgAGGcauuuccccGCGGgGCUg -3' miRNA: 3'- -ACC-UGUGUACugGGU----------UCC---------UGCCgCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 92163 | 0.66 | 0.907337 |
Target: 5'- cGGGCGuaaaaAUuGCCUGccGGCGGCGCCg -3' miRNA: 3'- aCCUGUg----UAcUGGGUucCUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 66392 | 0.66 | 0.894764 |
Target: 5'- cUGGAagcCGCuaGGCUCAAGGuuGGCGCg -3' miRNA: 3'- -ACCU---GUGuaCUGGGUUCCugCCGCGg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 40519 | 0.66 | 0.900534 |
Target: 5'- cGGAagccccuCACuccccgucGCCCAGGGACguGGCGCUg -3' miRNA: 3'- aCCU-------GUGuac-----UGGGUUCCUG--CCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 42757 | 0.66 | 0.90673 |
Target: 5'- aUGGACACGUgccgagcGACCCG-GG-UGGCcaguuacgGCCg -3' miRNA: 3'- -ACCUGUGUA-------CUGGGUuCCuGCCG--------CGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 59783 | 0.66 | 0.894764 |
Target: 5'- gGGACuCGUcGCCCGcAGGG-GGCGCg -3' miRNA: 3'- aCCUGuGUAcUGGGU-UCCUgCCGCGg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 27722 | 0.66 | 0.905509 |
Target: 5'- cGcACACuaaaauuuuaccgaAUGACCCcgccGGGAgGGUGCCg -3' miRNA: 3'- aCcUGUG--------------UACUGGGu---UCCUgCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 98682 | 0.66 | 0.907337 |
Target: 5'- cGGcgcuuGCACAccGGCCgGAucGCGGCGCCg -3' miRNA: 3'- aCC-----UGUGUa-CUGGgUUccUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 107262 | 0.66 | 0.894764 |
Target: 5'- cGGGCGCAUGuCCgcugCAGuGGGCcGCGCUc -3' miRNA: 3'- aCCUGUGUACuGG----GUU-CCUGcCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 64693 | 0.66 | 0.884059 |
Target: 5'- cGGGCAggcCGUGcucGCCCGAaucagguuuuuucuuGGGgcuCGGCGCCg -3' miRNA: 3'- aCCUGU---GUAC---UGGGUU---------------CCU---GCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 157298 | 0.66 | 0.881295 |
Target: 5'- cGGugACGUcaGuCCC--GGACGGCGgCg -3' miRNA: 3'- aCCugUGUA--CuGGGuuCCUGCCGCgG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 132647 | 0.66 | 0.881295 |
Target: 5'- gGGACGCG-GGCa--GGGGCGGCGgUa -3' miRNA: 3'- aCCUGUGUaCUGgguUCCUGCCGCgG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 16998 | 0.66 | 0.881295 |
Target: 5'- cGGuccaaACA-GACUCAGGGACGGCa-- -3' miRNA: 3'- aCCug---UGUaCUGGGUUCCUGCCGcgg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 72761 | 0.66 | 0.881295 |
Target: 5'- cGuGACGCGUGcGCCguAGcGACGGUGUUc -3' miRNA: 3'- aC-CUGUGUAC-UGGguUC-CUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 151740 | 0.66 | 0.880599 |
Target: 5'- aGGAuucguacCAUGUGACCUcauuugcauugaGGGGGCGGCacccGCCu -3' miRNA: 3'- aCCU-------GUGUACUGGG------------UUCCUGCCG----CGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 25211 | 0.66 | 0.894764 |
Target: 5'- uUGGcGCACAcggUGGCC--AGGGCaGUGCCg -3' miRNA: 3'- -ACC-UGUGU---ACUGGguUCCUGcCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 151522 | 0.66 | 0.91328 |
Target: 5'- aGGACAagcuagaACUCAuGGGCGGCGUg -3' miRNA: 3'- aCCUGUguac---UGGGUuCCUGCCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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