miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 161783 0.66 0.90673
Target:  5'- aUGGACACGUgccgagcGACCCG-GG-UGGCcaguuacgGCCg -3'
miRNA:   3'- -ACCUGUGUA-------CUGGGUuCCuGCCG--------CGG- -5'
24383 5' -56.6 NC_005264.1 + 18529 0.66 0.88814
Target:  5'- gGGGCGCcgucuCCCccuGAGGGCG-CGCCg -3'
miRNA:   3'- aCCUGUGuacu-GGG---UUCCUGCcGCGG- -5'
24383 5' -56.6 NC_005264.1 + 30117 0.66 0.894764
Target:  5'- cGGGCgGCGcGGCaCCGAGcuGCGGCGCa -3'
miRNA:   3'- aCCUG-UGUaCUG-GGUUCc-UGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 151740 0.66 0.880599
Target:  5'- aGGAuucguacCAUGUGACCUcauuugcauugaGGGGGCGGCacccGCCu -3'
miRNA:   3'- aCCU-------GUGUACUGGG------------UUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 68691 0.66 0.893457
Target:  5'- uUGGAC-CAUGACgUGgucuaucagcagcGGGuaccuuuccaccaGCGGCGCCa -3'
miRNA:   3'- -ACCUGuGUACUGgGU-------------UCC-------------UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 64693 0.66 0.884059
Target:  5'- cGGGCAggcCGUGcucGCCCGAaucagguuuuuucuuGGGgcuCGGCGCCg -3'
miRNA:   3'- aCCUGU---GUAC---UGGGUU---------------CCU---GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 37270 0.66 0.901164
Target:  5'- uUGGGCGCgAUGccGCCCAuucAGGuuuauGCGCCg -3'
miRNA:   3'- -ACCUGUG-UAC--UGGGU---UCCugc--CGCGG- -5'
24383 5' -56.6 NC_005264.1 + 41648 0.66 0.901164
Target:  5'- cGGcaGCGCGgccgGGUCUAAGGACGuGCGCa -3'
miRNA:   3'- aCC--UGUGUa---CUGGGUUCCUGC-CGCGg -5'
24383 5' -56.6 NC_005264.1 + 48914 0.66 0.907337
Target:  5'- uUGG-UACGUGccaacuGCCCGAGGACauUGCCg -3'
miRNA:   3'- -ACCuGUGUAC------UGGGUUCCUGccGCGG- -5'
24383 5' -56.6 NC_005264.1 + 20230 0.66 0.88814
Target:  5'- gUGGccccGCGCGUGACgggugggCAGGGguuGCGGCGCg -3'
miRNA:   3'- -ACC----UGUGUACUGg------GUUCC---UGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 157298 0.66 0.881295
Target:  5'- cGGugACGUcaGuCCC--GGACGGCGgCg -3'
miRNA:   3'- aCCugUGUA--CuGGGuuCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 74134 0.66 0.88814
Target:  5'- cGcGACcguUAUGuCCUAgaagcagugaAGGACGGUGCCa -3'
miRNA:   3'- aC-CUGu--GUACuGGGU----------UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 46596 0.66 0.88814
Target:  5'- cGGAgGCucUGuCCCugcggggcGAGGACGGCuCCg -3'
miRNA:   3'- aCCUgUGu-ACuGGG--------UUCCUGCCGcGG- -5'
24383 5' -56.6 NC_005264.1 + 65574 0.66 0.894764
Target:  5'- cGGcCACuaccGugCCAAGGccCGGCgGCCa -3'
miRNA:   3'- aCCuGUGua--CugGGUUCCu-GCCG-CGG- -5'
24383 5' -56.6 NC_005264.1 + 132647 0.66 0.881295
Target:  5'- gGGACGCG-GGCa--GGGGCGGCGgUa -3'
miRNA:   3'- aCCUGUGUaCUGgguUCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 52930 0.66 0.907337
Target:  5'- gGGGCauuGCAUGGCCgCGcccGCGGCGCa -3'
miRNA:   3'- aCCUG---UGUACUGG-GUuccUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 5752 0.66 0.912697
Target:  5'- cGGAUGCAUGAgguaaaaUCCGAGcgugucaauagaGAacUGGCGCCa -3'
miRNA:   3'- aCCUGUGUACU-------GGGUUC------------CU--GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 159546 0.66 0.900534
Target:  5'- cGGAagccccuCACuccccgucGCCCAGGGACguGGCGCUg -3'
miRNA:   3'- aCCU-------GUGuac-----UGGGUUCCUG--CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 72761 0.66 0.881295
Target:  5'- cGuGACGCGUGcGCCguAGcGACGGUGUUc -3'
miRNA:   3'- aC-CUGUGUAC-UGGguUC-CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 16998 0.66 0.881295
Target:  5'- cGGuccaaACA-GACUCAGGGACGGCa-- -3'
miRNA:   3'- aCCug---UGUaCUGGGUUCCUGCCGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.