miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 127035 0.69 0.756119
Target:  5'- gGGGCcgGCAgagGcGCCCGccacGACGGCGCCa -3'
miRNA:   3'- aCCUG--UGUa--C-UGGGUuc--CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 99614 0.71 0.638472
Target:  5'- aUGGACAUGgccguuaugcggaaaGACCCGGaGACGGCgGCCg -3'
miRNA:   3'- -ACCUGUGUa--------------CUGGGUUcCUGCCG-CGG- -5'
24383 5' -56.6 NC_005264.1 + 19314 0.71 0.666732
Target:  5'- cGGACACA-GGCCCccaggaaagccggAAGGACGcCGCg -3'
miRNA:   3'- aCCUGUGUaCUGGG-------------UUCCUGCcGCGg -5'
24383 5' -56.6 NC_005264.1 + 21543 0.7 0.697762
Target:  5'- cGGGCGaccguuUAUGGuguucUCCGAGGAcgcCGGCGCCg -3'
miRNA:   3'- aCCUGU------GUACU-----GGGUUCCU---GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 120639 0.7 0.707674
Target:  5'- gGGAUACggGACgCC--GGugGGCGCg -3'
miRNA:   3'- aCCUGUGuaCUG-GGuuCCugCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 125008 0.7 0.726327
Target:  5'- gGGAgACGUGGgCCAAGGGgagucguCGGCcCCg -3'
miRNA:   3'- aCCUgUGUACUgGGUUCCU-------GCCGcGG- -5'
24383 5' -56.6 NC_005264.1 + 98555 0.69 0.736999
Target:  5'- aUGGACGCgaacaGUGcGCCgCAAGaugaACGGCGCCc -3'
miRNA:   3'- -ACCUGUG-----UAC-UGG-GUUCc---UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 154813 0.69 0.756119
Target:  5'- aGGGCGCgGUGGCgCCGucguGGCGGgCGCCu -3'
miRNA:   3'- aCCUGUG-UACUG-GGUuc--CUGCC-GCGG- -5'
24383 5' -56.6 NC_005264.1 + 36529 0.69 0.756119
Target:  5'- cGGGCGCAgGAgCCAucGGcCGcGCGCCc -3'
miRNA:   3'- aCCUGUGUaCUgGGUu-CCuGC-CGCGG- -5'
24383 5' -56.6 NC_005264.1 + 153127 0.71 0.62735
Target:  5'- cGGGCACaAUGGCUCA---GCGGCGCg -3'
miRNA:   3'- aCCUGUG-UACUGGGUuccUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 120094 0.72 0.576992
Target:  5'- -cGGCACGUGuccAUCCAAGGugGGCGg- -3'
miRNA:   3'- acCUGUGUAC---UGGGUUCCugCCGCgg -5'
24383 5' -56.6 NC_005264.1 + 12742 0.72 0.567009
Target:  5'- cUGGACGC-UGgcauccuuaACCCAuGGGGCaGCGCCg -3'
miRNA:   3'- -ACCUGUGuAC---------UGGGU-UCCUGcCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 27135 0.77 0.351288
Target:  5'- gUGGGC-CAUGAgCCCGAGGGcCGGC-CCg -3'
miRNA:   3'- -ACCUGuGUACU-GGGUUCCU-GCCGcGG- -5'
24383 5' -56.6 NC_005264.1 + 37085 0.76 0.366961
Target:  5'- aGcGACGCGgcgGcaguUCCGGGGACGGCGCCc -3'
miRNA:   3'- aC-CUGUGUa--Cu---GGGUUCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 136450 0.76 0.383108
Target:  5'- aUGGGCGCugaGGCCgCGcucAGaGACGGCGCCg -3'
miRNA:   3'- -ACCUGUGua-CUGG-GU---UC-CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 152290 0.76 0.399721
Target:  5'- cGGcgaACGCGcGAUCCGcgccccugAGGGCGGCGCCg -3'
miRNA:   3'- aCC---UGUGUaCUGGGU--------UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 95326 0.75 0.415922
Target:  5'- gGGACgugucucGCGUGAUCCGAGGcaAUGGgGCCg -3'
miRNA:   3'- aCCUG-------UGUACUGGGUUCC--UGCCgCGG- -5'
24383 5' -56.6 NC_005264.1 + 41095 0.75 0.425484
Target:  5'- -aGACuag-GGCCuCGAGGGCGGCGCCc -3'
miRNA:   3'- acCUGuguaCUGG-GUUCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 6985 0.74 0.508246
Target:  5'- aGuGGCGCGggguUGuCCCugcGGGCGGCGCCa -3'
miRNA:   3'- aC-CUGUGU----ACuGGGuu-CCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 102497 0.73 0.517878
Target:  5'- cGGGCGCcuaugGGCUCGGGGAagacaaCGGCGCUa -3'
miRNA:   3'- aCCUGUGua---CUGGGUUCCU------GCCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.