Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24383 | 5' | -56.6 | NC_005264.1 | + | 3810 | 0.66 | 0.91328 |
Target: 5'- cGGucCGCGaguucgGGCCC--GGGCGGgGCCg -3' miRNA: 3'- aCCu-GUGUa-----CUGGGuuCCUGCCgCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 65114 | 0.66 | 0.88814 |
Target: 5'- cGGACAgCucuUGGCgCCu--GGCGGCGCUg -3' miRNA: 3'- aCCUGU-Gu--ACUG-GGuucCUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 38271 | 0.66 | 0.881295 |
Target: 5'- cGGugACGUcaGuCCC--GGACGGCGgCg -3' miRNA: 3'- aCCugUGUA--CuGGGuuCCUGCCGCgG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 121776 | 1.11 | 0.002089 |
Target: 5'- aUGGACACAUGACCCAAGGACGGCGCCc -3' miRNA: 3'- -ACCUGUGUACUGGGUUCCUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 98682 | 0.66 | 0.907337 |
Target: 5'- cGGcgcuuGCACAccGGCCgGAucGCGGCGCCg -3' miRNA: 3'- aCC-----UGUGUa-CUGGgUUccUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 92163 | 0.66 | 0.907337 |
Target: 5'- cGGGCGuaaaaAUuGCCUGccGGCGGCGCCg -3' miRNA: 3'- aCCUGUg----UAcUGGGUucCUGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 27722 | 0.66 | 0.905509 |
Target: 5'- cGcACACuaaaauuuuaccgaAUGACCCcgccGGGAgGGUGCCg -3' miRNA: 3'- aCcUGUG--------------UACUGGGu---UCCUgCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 150686 | 0.66 | 0.901164 |
Target: 5'- -cGACagACGaGACCCAGcaacGGGCaGCGCCg -3' miRNA: 3'- acCUG--UGUaCUGGGUU----CCUGcCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 107262 | 0.66 | 0.894764 |
Target: 5'- cGGGCGCAUGuCCgcugCAGuGGGCcGCGCUc -3' miRNA: 3'- aCCUGUGUACuGG----GUU-CCUGcCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 131995 | 0.66 | 0.88814 |
Target: 5'- cGGugGCgGUGGgCCGAc--CGGCGCCa -3' miRNA: 3'- aCCugUG-UACUgGGUUccuGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 59783 | 0.66 | 0.894764 |
Target: 5'- gGGACuCGUcGCCCGcAGGG-GGCGCg -3' miRNA: 3'- aCCUGuGUAcUGGGU-UCCUgCCGCGg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 40519 | 0.66 | 0.900534 |
Target: 5'- cGGAagccccuCACuccccgucGCCCAGGGACguGGCGCUg -3' miRNA: 3'- aCCU-------GUGuac-----UGGGUUCCUG--CCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 154811 | 0.66 | 0.91328 |
Target: 5'- gGGACAagacCGUGACCguGgauguuuucucuGGAUucauGGCGCCg -3' miRNA: 3'- aCCUGU----GUACUGGguU------------CCUG----CCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 25211 | 0.66 | 0.894764 |
Target: 5'- uUGGcGCACAcggUGGCC--AGGGCaGUGCCg -3' miRNA: 3'- -ACC-UGUGU---ACUGGguUCCUGcCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 30859 | 0.66 | 0.91328 |
Target: 5'- gGcGGCGCGccGCCCGguAGGcaACGGCGUCu -3' miRNA: 3'- aC-CUGUGUacUGGGU--UCC--UGCCGCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 48025 | 0.66 | 0.901164 |
Target: 5'- uUGGcACACGUGugCCAgaagcugucgAGGcauuuccccGCGGgGCUg -3' miRNA: 3'- -ACC-UGUGUACugGGU----------UCC---------UGCCgCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 111609 | 0.66 | 0.894111 |
Target: 5'- cGcGGCGCGUaaaauugGAuCCCGAGGACGuguacCGCCg -3' miRNA: 3'- aC-CUGUGUA-------CU-GGGUUCCUGCc----GCGG- -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 82353 | 0.66 | 0.88814 |
Target: 5'- --cGCACGUGugCCAGGca-GGCGCg -3' miRNA: 3'- accUGUGUACugGGUUCcugCCGCGg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 151522 | 0.66 | 0.91328 |
Target: 5'- aGGACAagcuagaACUCAuGGGCGGCGUg -3' miRNA: 3'- aCCUGUguac---UGGGUuCCUGCCGCGg -5' |
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24383 | 5' | -56.6 | NC_005264.1 | + | 42757 | 0.66 | 0.90673 |
Target: 5'- aUGGACACGUgccgagcGACCCG-GG-UGGCcaguuacgGCCg -3' miRNA: 3'- -ACCUGUGUA-------CUGGGUuCCuGCCG--------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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