miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 359 0.69 0.774812
Target:  5'- gGGACAUgccaGACCUuauuggucuuugGGGGGCaGCGCCg -3'
miRNA:   3'- aCCUGUGua--CUGGG------------UUCCUGcCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 1067 0.72 0.576992
Target:  5'- -cGGCACGUGuccAUCCAAGGugGGCGg- -3'
miRNA:   3'- acCUGUGUAC---UGGGUUCCugCCGCgg -5'
24383 5' -56.6 NC_005264.1 + 1344 0.68 0.810634
Target:  5'- gGGACACGcaGACCUGAGccCGGUGUCu -3'
miRNA:   3'- aCCUGUGUa-CUGGGUUCcuGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 1612 0.7 0.707674
Target:  5'- gGGAUACggGACgCC--GGugGGCGCg -3'
miRNA:   3'- aCCUGUGuaCUG-GGuuCCugCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 2380 0.68 0.835872
Target:  5'- aGuGGC-CGUcGCCCGcAGGAgccCGGCGCCg -3'
miRNA:   3'- aC-CUGuGUAcUGGGU-UCCU---GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 3810 0.66 0.91328
Target:  5'- cGGucCGCGaguucgGGCCC--GGGCGGgGCCg -3'
miRNA:   3'- aCCu-GUGUa-----CUGGGuuCCUGCCgCGG- -5'
24383 5' -56.6 NC_005264.1 + 5290 0.68 0.810634
Target:  5'- gGGGCgGCGgcUGACCCGuGGGGCGG-GCg -3'
miRNA:   3'- aCCUG-UGU--ACUGGGU-UCCUGCCgCGg -5'
24383 5' -56.6 NC_005264.1 + 5752 0.66 0.912697
Target:  5'- cGGAUGCAUGAgguaaaaUCCGAGcgugucaauagaGAacUGGCGCCa -3'
miRNA:   3'- aCCUGUGUACU-------GGGUUC------------CU--GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 6644 0.67 0.859484
Target:  5'- gGGGCACAUG-UCCGgaagcuccggcAGaGAUccuGGCGCCa -3'
miRNA:   3'- aCCUGUGUACuGGGU-----------UC-CUG---CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 6985 0.74 0.508246
Target:  5'- aGuGGCGCGggguUGuCCCugcGGGCGGCGCCa -3'
miRNA:   3'- aC-CUGUGU----ACuGGGuu-CCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 7251 0.67 0.843933
Target:  5'- aGGACu--UGG-CgGAGGuCGGCGCCa -3'
miRNA:   3'- aCCUGuguACUgGgUUCCuGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 7656 0.66 0.91328
Target:  5'- gGGAUACGUG--UCGGGGucuaucuCGGCGUCg -3'
miRNA:   3'- aCCUGUGUACugGGUUCCu------GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 8008 0.69 0.756119
Target:  5'- gGGGCcgGCAgagGcGCCCGccacGACGGCGCCa -3'
miRNA:   3'- aCCUG--UGUa--C-UGGGUuc--CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 9963 0.73 0.547182
Target:  5'- gGGACuGCcgGACCCGuGGGCGaUGCCg -3'
miRNA:   3'- aCCUG-UGuaCUGGGUuCCUGCcGCGG- -5'
24383 5' -56.6 NC_005264.1 + 11695 0.67 0.873517
Target:  5'- cGGAuuaguacCAUGUGACauaauuugcaUCGauGGGGCGGCGCCc -3'
miRNA:   3'- aCCU-------GUGUACUG----------GGU--UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 12742 0.72 0.567009
Target:  5'- cUGGACGC-UGgcauccuuaACCCAuGGGGCaGCGCCg -3'
miRNA:   3'- -ACCUGUGuAC---------UGGGU-UCCUGcCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 13620 0.66 0.881295
Target:  5'- gGGACGCG-GGCa--GGGGCGGCGgUa -3'
miRNA:   3'- aCCUGUGUaCUGgguUCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 13685 0.68 0.835872
Target:  5'- cGGuaacCGcCAUGGCCCAGGGAgaacUGGCaGCUc -3'
miRNA:   3'- aCCu---GU-GUACUGGGUUCCU----GCCG-CGG- -5'
24383 5' -56.6 NC_005264.1 + 13808 0.68 0.835872
Target:  5'- cGGGCAgGgGGCUguGGGACguGGCGUCu -3'
miRNA:   3'- aCCUGUgUaCUGGguUCCUG--CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 16998 0.66 0.881295
Target:  5'- cGGuccaaACA-GACUCAGGGACGGCa-- -3'
miRNA:   3'- aCCug---UGUaCUGGGUUCCUGCCGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.