miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 161783 0.66 0.90673
Target:  5'- aUGGACACGUgccgagcGACCCG-GG-UGGCcaguuacgGCCg -3'
miRNA:   3'- -ACCUGUGUA-------CUGGGUuCCuGCCG--------CGG- -5'
24383 5' -56.6 NC_005264.1 + 160407 0.67 0.840731
Target:  5'- cGGGCACAcgGACguguccgcggccuCCGcuuucuuccuaggcAGGcCGGCGCCg -3'
miRNA:   3'- aCCUGUGUa-CUG-------------GGU--------------UCCuGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 159546 0.66 0.900534
Target:  5'- cGGAagccccuCACuccccgucGCCCAGGGACguGGCGCUg -3'
miRNA:   3'- aCCU-------GUGuac-----UGGGUUCCUG--CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 159384 0.71 0.677786
Target:  5'- aUGcGGCACcgGGCgCCAcGGGCGGCGg- -3'
miRNA:   3'- -AC-CUGUGuaCUG-GGUuCCUGCCGCgg -5'
24383 5' -56.6 NC_005264.1 + 158108 0.69 0.765523
Target:  5'- cGGACGCc-GGCUCGgcGGGcaGCGGCGUCu -3'
miRNA:   3'- aCCUGUGuaCUGGGU--UCC--UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 157298 0.66 0.881295
Target:  5'- cGGugACGUcaGuCCC--GGACGGCGgCg -3'
miRNA:   3'- aCCugUGUA--CuGGGuuCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 156697 0.71 0.667739
Target:  5'- --cGCGCGaGACCCAGgacGGGCGGUGCUu -3'
miRNA:   3'- accUGUGUaCUGGGUU---CCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 156277 0.67 0.851806
Target:  5'- gGGGCGCAUcACCgu-GGACgaGGCGCUc -3'
miRNA:   3'- aCCUGUGUAcUGGguuCCUG--CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 156164 0.68 0.835872
Target:  5'- aGGGCGCAUaugcgcGGCUUugcGGcgugGCGGCGCCg -3'
miRNA:   3'- aCCUGUGUA------CUGGGuu-CC----UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 155674 0.69 0.736999
Target:  5'- gUGGACAgcgggGUGACUCGgcAGGGCGuaGCCu -3'
miRNA:   3'- -ACCUGUg----UACUGGGU--UCCUGCcgCGG- -5'
24383 5' -56.6 NC_005264.1 + 155429 0.67 0.851806
Target:  5'- -cGGCGCAcGAaCCAAuGGAcgaCGGCGCCg -3'
miRNA:   3'- acCUGUGUaCUgGGUU-CCU---GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 154813 0.69 0.756119
Target:  5'- aGGGCGCgGUGGCgCCGucguGGCGGgCGCCu -3'
miRNA:   3'- aCCUGUG-UACUG-GGUuc--CUGCC-GCGG- -5'
24383 5' -56.6 NC_005264.1 + 154811 0.66 0.91328
Target:  5'- gGGACAagacCGUGACCguGgauguuuucucuGGAUucauGGCGCCg -3'
miRNA:   3'- aCCUGU----GUACUGGguU------------CCUG----CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 153127 0.71 0.62735
Target:  5'- cGGGCACaAUGGCUCA---GCGGCGCg -3'
miRNA:   3'- aCCUGUG-UACUGGGUuccUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 152290 0.76 0.399721
Target:  5'- cGGcgaACGCGcGAUCCGcgccccugAGGGCGGCGCCg -3'
miRNA:   3'- aCC---UGUGUaCUGGGU--------UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 151888 0.68 0.819215
Target:  5'- cGGGCAUcagcuguauGUGGCggaGGGGACGGCGgCu -3'
miRNA:   3'- aCCUGUG---------UACUGgg-UUCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 151740 0.66 0.880599
Target:  5'- aGGAuucguacCAUGUGACCUcauuugcauugaGGGGGCGGCacccGCCu -3'
miRNA:   3'- aCCU-------GUGUACUGGG------------UUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 151522 0.66 0.91328
Target:  5'- aGGACAagcuagaACUCAuGGGCGGCGUg -3'
miRNA:   3'- aCCUGUguac---UGGGUuCCUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 150809 0.78 0.30717
Target:  5'- cGGGCGCuucGCCUAAGGGCGGCggucGCCg -3'
miRNA:   3'- aCCUGUGuacUGGGUUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 150686 0.66 0.901164
Target:  5'- -cGACagACGaGACCCAGcaacGGGCaGCGCCg -3'
miRNA:   3'- acCUG--UGUaCUGGGUU----CCUGcCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.