miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 121776 1.11 0.002089
Target:  5'- aUGGACACAUGACCCAAGGACGGCGCCc -3'
miRNA:   3'- -ACCUGUGUACUGGGUUCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 150809 0.78 0.30717
Target:  5'- cGGGCGCuucGCCUAAGGGCGGCggucGCCg -3'
miRNA:   3'- aCCUGUGuacUGGGUUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 31783 0.78 0.30717
Target:  5'- cGGGCGCuucGCCUAAGGGCGGCggucGCCg -3'
miRNA:   3'- aCCUGUGuacUGGGUUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 27135 0.77 0.351288
Target:  5'- gUGGGC-CAUGAgCCCGAGGGcCGGC-CCg -3'
miRNA:   3'- -ACCUGuGUACU-GGGUUCCU-GCCGcGG- -5'
24383 5' -56.6 NC_005264.1 + 60873 0.77 0.358282
Target:  5'- aUGGGCACGggaUGACaCCGgccaggcGGGACGGCGUa -3'
miRNA:   3'- -ACCUGUGU---ACUG-GGU-------UCCUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 37085 0.76 0.366961
Target:  5'- aGcGACGCGgcgGcaguUCCGGGGACGGCGCCc -3'
miRNA:   3'- aC-CUGUGUa--Cu---GGGUUCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 136450 0.76 0.383108
Target:  5'- aUGGGCGCugaGGCCgCGcucAGaGACGGCGCCg -3'
miRNA:   3'- -ACCUGUGua-CUGG-GU---UC-CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 152290 0.76 0.399721
Target:  5'- cGGcgaACGCGcGAUCCGcgccccugAGGGCGGCGCCg -3'
miRNA:   3'- aCC---UGUGUaCUGGGU--------UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 33263 0.76 0.399721
Target:  5'- cGGcgaACGCGcGAUCCGcgccccugAGGGCGGCGCCg -3'
miRNA:   3'- aCC---UGUGUaCUGGGU--------UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 95326 0.75 0.415922
Target:  5'- gGGACgugucucGCGUGAUCCGAGGcaAUGGgGCCg -3'
miRNA:   3'- aCCUG-------UGUACUGGGUUCC--UGCCgCGG- -5'
24383 5' -56.6 NC_005264.1 + 41095 0.75 0.425484
Target:  5'- -aGACuag-GGCCuCGAGGGCGGCGCCc -3'
miRNA:   3'- acCUGuguaCUGG-GUUCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 109065 0.75 0.452211
Target:  5'- cUGGAacaGCAgcccagcgauugUGGCgaagaCGAGGACGGCGCCg -3'
miRNA:   3'- -ACCUg--UGU------------ACUGg----GUUCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 59724 0.74 0.469605
Target:  5'- cGGcGCGCAUGGCUCGuuagaagagucauGGGGCGGCGgCu -3'
miRNA:   3'- aCC-UGUGUACUGGGU-------------UCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 106408 0.74 0.498692
Target:  5'- cUGGAaacCGCAaaGACCCGAagcucGACGGCGCCg -3'
miRNA:   3'- -ACCU---GUGUa-CUGGGUUc----CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 6985 0.74 0.508246
Target:  5'- aGuGGCGCGggguUGuCCCugcGGGCGGCGCCa -3'
miRNA:   3'- aC-CUGUGU----ACuGGGuu-CCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 102497 0.73 0.517878
Target:  5'- cGGGCGCcuaugGGCUCGGGGAagacaaCGGCGCUa -3'
miRNA:   3'- aCCUGUGua---CUGGGUUCCU------GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 100450 0.73 0.537351
Target:  5'- aGGGCGCAggucaaUGGCCCAAGuucgcugucGCGGCgGCCa -3'
miRNA:   3'- aCCUGUGU------ACUGGGUUCc--------UGCCG-CGG- -5'
24383 5' -56.6 NC_005264.1 + 9963 0.73 0.547182
Target:  5'- gGGACuGCcgGACCCGuGGGCGaUGCCg -3'
miRNA:   3'- aCCUG-UGuaCUGGGUuCCUGCcGCGG- -5'
24383 5' -56.6 NC_005264.1 + 12742 0.72 0.567009
Target:  5'- cUGGACGC-UGgcauccuuaACCCAuGGGGCaGCGCCg -3'
miRNA:   3'- -ACCUGUGuAC---------UGGGU-UCCUGcCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 120094 0.72 0.576992
Target:  5'- -cGGCACGUGuccAUCCAAGGugGGCGg- -3'
miRNA:   3'- acCUGUGUAC---UGGGUUCCugCCGCgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.