miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 18529 0.66 0.88814
Target:  5'- gGGGCGCcgucuCCCccuGAGGGCG-CGCCg -3'
miRNA:   3'- aCCUGUGuacu-GGG---UUCCUGCcGCGG- -5'
24383 5' -56.6 NC_005264.1 + 19314 0.71 0.666732
Target:  5'- cGGACACA-GGCCCccaggaaagccggAAGGACGcCGCg -3'
miRNA:   3'- aCCUGUGUaCUGGG-------------UUCCUGCcGCGg -5'
24383 5' -56.6 NC_005264.1 + 19394 0.68 0.82763
Target:  5'- gGGGCGCAUuggcGACaugaUggGGGaggcgaGGCGCCg -3'
miRNA:   3'- aCCUGUGUA----CUGg---GuuCCUg-----CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 20230 0.66 0.88814
Target:  5'- gUGGccccGCGCGUGACgggugggCAGGGguuGCGGCGCg -3'
miRNA:   3'- -ACC----UGUGUACUGg------GUUCC---UGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 21543 0.7 0.697762
Target:  5'- cGGGCGaccguuUAUGGuguucUCCGAGGAcgcCGGCGCCg -3'
miRNA:   3'- aCCUGU------GUACU-----GGGUUCCU---GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 21699 0.67 0.866962
Target:  5'- cGGACcucguaACAUGACCCc-GGcCGuGCGCg -3'
miRNA:   3'- aCCUG------UGUACUGGGuuCCuGC-CGCGg -5'
24383 5' -56.6 NC_005264.1 + 22641 0.68 0.835872
Target:  5'- gGGACuucgaacacgGCAaaGGCCCAcgaAGGACGaGCGUCu -3'
miRNA:   3'- aCCUG----------UGUa-CUGGGU---UCCUGC-CGCGG- -5'
24383 5' -56.6 NC_005264.1 + 24948 0.72 0.576992
Target:  5'- --aGCACAUGugCCGuaccAGGGCGcuGCGCCg -3'
miRNA:   3'- accUGUGUACugGGU----UCCUGC--CGCGG- -5'
24383 5' -56.6 NC_005264.1 + 25211 0.66 0.894764
Target:  5'- uUGGcGCACAcggUGGCC--AGGGCaGUGCCg -3'
miRNA:   3'- -ACC-UGUGU---ACUGGguUCCUGcCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 25938 0.68 0.82763
Target:  5'- cGGACGaggcGACgaagaUGAGGACGGCGCg -3'
miRNA:   3'- aCCUGUgua-CUGg----GUUCCUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 26110 0.67 0.851806
Target:  5'- cUGGccacCGCGcGGCUCGuGGcGCGGCGCCg -3'
miRNA:   3'- -ACCu---GUGUaCUGGGUuCC-UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 26484 0.67 0.843933
Target:  5'- -aGACAgAgGGCCCGu--GCGGCGCCg -3'
miRNA:   3'- acCUGUgUaCUGGGUuccUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 26532 0.71 0.626338
Target:  5'- cGGACACggGAuuCCCAacugcgcuGGGACGGUaacgacgGCCg -3'
miRNA:   3'- aCCUGUGuaCU--GGGU--------UCCUGCCG-------CGG- -5'
24383 5' -56.6 NC_005264.1 + 27135 0.77 0.351288
Target:  5'- gUGGGC-CAUGAgCCCGAGGGcCGGC-CCg -3'
miRNA:   3'- -ACCUGuGUACU-GGGUUCCU-GCCGcGG- -5'
24383 5' -56.6 NC_005264.1 + 27722 0.66 0.905509
Target:  5'- cGcACACuaaaauuuuaccgaAUGACCCcgccGGGAgGGUGCCg -3'
miRNA:   3'- aCcUGUG--------------UACUGGGu---UCCUgCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 28467 0.66 0.91328
Target:  5'- cGGACAC-UGGCUaaaucuGcGAUGGCGCg -3'
miRNA:   3'- aCCUGUGuACUGGguu---C-CUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 30117 0.66 0.894764
Target:  5'- cGGGCgGCGcGGCaCCGAGcuGCGGCGCa -3'
miRNA:   3'- aCCUG-UGUaCUG-GGUUCc-UGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 30859 0.66 0.91328
Target:  5'- gGcGGCGCGccGCCCGguAGGcaACGGCGUCu -3'
miRNA:   3'- aC-CUGUGUacUGGGU--UCC--UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 31783 0.78 0.30717
Target:  5'- cGGGCGCuucGCCUAAGGGCGGCggucGCCg -3'
miRNA:   3'- aCCUGUGuacUGGGUUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 32714 0.66 0.880599
Target:  5'- aGGAuucguacCAUGUGACCUcauuugcauugaGGGGGCGGCacccGCCu -3'
miRNA:   3'- aCCU-------GUGUACUGGG------------UUCCUGCCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.