miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 97430 0.69 0.6621
Target:  5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3'
miRNA:   3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 82921 0.69 0.6621
Target:  5'- gGAGUccGCCGCAGaCGUCGGccACGCGc-- -3'
miRNA:   3'- gCUCA--CGGCGUC-GCGGCU--UGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 94411 0.69 0.6621
Target:  5'- -cAG-GCCGCGGCGCCGGuaguccagaGCGAGc -3'
miRNA:   3'- gcUCaCGGCGUCGCGGCUug-------CGCUUu -5'
24385 3' -57.9 NC_005264.1 + 58879 0.69 0.672185
Target:  5'- aGGGUG-CGCAGCGCC--ACGCGu-- -3'
miRNA:   3'- gCUCACgGCGUCGCGGcuUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 60598 0.69 0.672185
Target:  5'- uCGAGccccuucucguaUGCCGCGGCaGCCGGcucGCGCaGGAGc -3'
miRNA:   3'- -GCUC------------ACGGCGUCG-CGGCU---UGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 52201 0.69 0.672185
Target:  5'- uGAGgGCCGUggGGCGCgGuGGCGCGAGc -3'
miRNA:   3'- gCUCaCGGCG--UCGCGgC-UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 24840 0.69 0.672185
Target:  5'- gGAGUGCCGCuGCuuCCGcACgGCGAAGu -3'
miRNA:   3'- gCUCACGGCGuCGc-GGCuUG-CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 162746 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 95919 0.69 0.692251
Target:  5'- -aAGUGgUGCAGCGCCGGAgaCGAGAa -3'
miRNA:   3'- gcUCACgGCGUCGCGGCUUgcGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 43720 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 26488 0.68 0.711133
Target:  5'- aGAGgGCCcguGCGGCGCCGAAccagcuucuacgcCGCGGc- -3'
miRNA:   3'- gCUCaCGG---CGUCGCGGCUU-------------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 35585 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 154612 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 155369 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 36342 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 13440 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 132467 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 40786 0.68 0.731723
Target:  5'- -----uCCGCGGCGCCGAGaGCGGAGc -3'
miRNA:   3'- gcucacGGCGUCGCGGCUUgCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 39219 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 96225 0.68 0.731723
Target:  5'- -cGG-GCCGCgacGGCGCCGGcaACGCGGc- -3'
miRNA:   3'- gcUCaCGGCG---UCGCGGCU--UGCGCUuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.