miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 120444 1.13 0.002812
Target:  5'- aGCUUCGCGCAUUUCCACCGCCACGUCg -3'
miRNA:   3'- -CGAAGCGCGUAAAGGUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 32313 0.81 0.290179
Target:  5'- cGCUUCGCGCAggUCUAucUCGCCgGCGUCu -3'
miRNA:   3'- -CGAAGCGCGUaaAGGU--GGCGG-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 9478 0.79 0.372979
Target:  5'- cGCUUCGCGCGUcuugUCUGCCGCCuccccCGUg -3'
miRNA:   3'- -CGAAGCGCGUAa---AGGUGGCGGu----GCAg -5'
24385 5' -53.9 NC_005264.1 + 132218 0.78 0.406821
Target:  5'- cGCUgCGCGCGgaUCCgucGCCGCCGcCGUCg -3'
miRNA:   3'- -CGAaGCGCGUaaAGG---UGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 13191 0.78 0.406821
Target:  5'- cGCUgCGCGCGgaUCCgucGCCGCCGcCGUCg -3'
miRNA:   3'- -CGAaGCGCGUaaAGG---UGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 117189 0.77 0.461029
Target:  5'- cGCUUgGCGCcuagCCGCCGCguCGUCa -3'
miRNA:   3'- -CGAAgCGCGuaaaGGUGGCGguGCAG- -5'
24385 5' -53.9 NC_005264.1 + 8615 0.76 0.516844
Target:  5'- cGCaaCGCGCAccgguaggcgcUUCACCGCCACGUCu -3'
miRNA:   3'- -CGaaGCGCGUaa---------AGGUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 4350 0.76 0.518819
Target:  5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3'
miRNA:   3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5'
24385 5' -53.9 NC_005264.1 + 123377 0.76 0.518819
Target:  5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3'
miRNA:   3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5'
24385 5' -53.9 NC_005264.1 + 97944 0.74 0.598756
Target:  5'- aGCUUCGCGUcgaggucAUcUCCGCCGCCuuGCGg- -3'
miRNA:   3'- -CGAAGCGCG-------UAaAGGUGGCGG--UGCag -5'
24385 5' -53.9 NC_005264.1 + 90819 0.74 0.599785
Target:  5'- cGUcUCGCGUGUggCgGCCGCgCACGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaaGgUGGCG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 102862 0.74 0.630733
Target:  5'- cGC-UCGCGg----CCACCGCCGCGUg -3'
miRNA:   3'- -CGaAGCGCguaaaGGUGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 86700 0.73 0.671971
Target:  5'- cGCcgCGCGCGgucuuugCCGCCGuCCGCGUa -3'
miRNA:   3'- -CGaaGCGCGUaaa----GGUGGC-GGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 69298 0.73 0.68222
Target:  5'- aGCUUUGCGCAguagUUCCGCCuuUuCGUCu -3'
miRNA:   3'- -CGAAGCGCGUa---AAGGUGGcgGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 160340 0.73 0.702582
Target:  5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3'
miRNA:   3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 41313 0.73 0.702582
Target:  5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3'
miRNA:   3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 125742 0.72 0.722703
Target:  5'- aGUUggGCGCcg-UCCccggaacuGCCGCCGCGUCg -3'
miRNA:   3'- -CGAagCGCGuaaAGG--------UGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 6517 0.72 0.732648
Target:  5'- aGCgaagcaGCGCGUUUgCAgCGCCGCGUa -3'
miRNA:   3'- -CGaag---CGCGUAAAgGUgGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 114803 0.72 0.752265
Target:  5'- uGCUccaUGCGCAUUggCCACgCGCCAUGgUCg -3'
miRNA:   3'- -CGAa--GCGCGUAAa-GGUG-GCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 59918 0.71 0.758069
Target:  5'- cGCUcCGCGCAgcucggccaagagUUCCACCagcGUCGCGUUg -3'
miRNA:   3'- -CGAaGCGCGUa------------AAGGUGG---CGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.