miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 80576 0.7 0.842408
Target:  5'- cCUUCGCGC---UCCgguGCCGCC-UGUCg -3'
miRNA:   3'- cGAAGCGCGuaaAGG---UGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 3892 0.71 0.77145
Target:  5'- uCUUCGCGuCGUUuaCGCCGCaUugGUCg -3'
miRNA:   3'- cGAAGCGC-GUAAagGUGGCG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 57907 0.71 0.780857
Target:  5'- cGCUUgGCacgGCugggggUUCCGCCGCCuuGUCu -3'
miRNA:   3'- -CGAAgCG---CGua----AAGGUGGCGGugCAG- -5'
24385 5' -53.9 NC_005264.1 + 109859 0.71 0.780857
Target:  5'- uGC-UCGCGCAccgCCugaguucgcagcACCGCCGCGUa -3'
miRNA:   3'- -CGaAGCGCGUaaaGG------------UGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 73154 0.71 0.790128
Target:  5'- aGCUgguaGCGCucaugcCCACCGCCAgcuCGUCu -3'
miRNA:   3'- -CGAag--CGCGuaaa--GGUGGCGGU---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 119451 0.71 0.808228
Target:  5'- gGCUUCGCGCc---CCuCUGCCcuaGCGUCu -3'
miRNA:   3'- -CGAAGCGCGuaaaGGuGGCGG---UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 129582 0.71 0.808228
Target:  5'- cGCggaUCGCGCGUUcgCCGCUGCUuccuCGUUc -3'
miRNA:   3'- -CGa--AGCGCGUAAa-GGUGGCGGu---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 33690 0.7 0.825676
Target:  5'- gGCUaaCGCGCAUcgcUCCGa-GCCGCGUCu -3'
miRNA:   3'- -CGAa-GCGCGUAa--AGGUggCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 56317 0.7 0.834136
Target:  5'- cGCggcCGCGCug--CCGCCGUCGCG-Ca -3'
miRNA:   3'- -CGaa-GCGCGuaaaGGUGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 137210 0.71 0.77145
Target:  5'- cGCggaGCGCGgccCCACCGCCGCcGUg -3'
miRNA:   3'- -CGaagCGCGUaaaGGUGGCGGUG-CAg -5'
24385 5' -53.9 NC_005264.1 + 4791 0.71 0.77145
Target:  5'- -gUUCGCGCAccUCCACCgacucagaaGCCACG-Cg -3'
miRNA:   3'- cgAAGCGCGUaaAGGUGG---------CGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 150813 0.71 0.761916
Target:  5'- cGCUUCGCcuaaggGCGgcggUCGCCGCCGCagGUCg -3'
miRNA:   3'- -CGAAGCG------CGUaaa-GGUGGCGGUG--CAG- -5'
24385 5' -53.9 NC_005264.1 + 9478 0.79 0.372979
Target:  5'- cGCUUCGCGCGUcuugUCUGCCGCCuccccCGUg -3'
miRNA:   3'- -CGAAGCGCGUAa---AGGUGGCGGu----GCAg -5'
24385 5' -53.9 NC_005264.1 + 132218 0.78 0.406821
Target:  5'- cGCUgCGCGCGgaUCCgucGCCGCCGcCGUCg -3'
miRNA:   3'- -CGAaGCGCGUaaAGG---UGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 117189 0.77 0.461029
Target:  5'- cGCUUgGCGCcuagCCGCCGCguCGUCa -3'
miRNA:   3'- -CGAAgCGCGuaaaGGUGGCGguGCAG- -5'
24385 5' -53.9 NC_005264.1 + 8615 0.76 0.516844
Target:  5'- cGCaaCGCGCAccgguaggcgcUUCACCGCCACGUCu -3'
miRNA:   3'- -CGaaGCGCGUaa---------AGGUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 123377 0.76 0.518819
Target:  5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3'
miRNA:   3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5'
24385 5' -53.9 NC_005264.1 + 160340 0.73 0.702582
Target:  5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3'
miRNA:   3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 6517 0.72 0.732648
Target:  5'- aGCgaagcaGCGCGUUUgCAgCGCCGCGUa -3'
miRNA:   3'- -CGaag---CGCGUAAAgGUgGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 30525 0.71 0.761916
Target:  5'- gGCUcUCGCGCAgUUUgGCCGaCCGCGg- -3'
miRNA:   3'- -CGA-AGCGCGUaAAGgUGGC-GGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.