miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 424 0.71 0.808228
Target:  5'- gGCUUCGCGCc---CCuCUGCCcuaGCGUCu -3'
miRNA:   3'- -CGAAGCGCGuaaaGGuGGCGG---UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 3214 0.66 0.969654
Target:  5'- uCUUCGCGUAg--CCACCuaggcugagacgguGCgCAUGUCc -3'
miRNA:   3'- cGAAGCGCGUaaaGGUGG--------------CG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 3427 0.69 0.887725
Target:  5'- gGCggCGCGCcccacuucucagGggUCCGCCGCC-CGUg -3'
miRNA:   3'- -CGaaGCGCG------------UaaAGGUGGCGGuGCAg -5'
24385 5' -53.9 NC_005264.1 + 3892 0.71 0.77145
Target:  5'- uCUUCGCGuCGUUuaCGCCGCaUugGUCg -3'
miRNA:   3'- cGAAGCGC-GUAAagGUGGCG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 4350 0.76 0.518819
Target:  5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3'
miRNA:   3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5'
24385 5' -53.9 NC_005264.1 + 4791 0.71 0.77145
Target:  5'- -gUUCGCGCAccUCCACCgacucagaaGCCACG-Cg -3'
miRNA:   3'- cgAAGCGCGUaaAGGUGG---------CGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 5367 0.69 0.894504
Target:  5'- cGCgUCGCGCuc-UUUACCcgaguaGCCGCGUCu -3'
miRNA:   3'- -CGaAGCGCGuaaAGGUGG------CGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 6390 0.69 0.873484
Target:  5'- cGC-UCGUGCugcUCCACgGCCAUGcCg -3'
miRNA:   3'- -CGaAGCGCGuaaAGGUGgCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 6517 0.72 0.732648
Target:  5'- aGCgaagcaGCGCGUUUgCAgCGCCGCGUa -3'
miRNA:   3'- -CGaag---CGCGUAAAgGUgGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 7924 0.69 0.87127
Target:  5'- aGCaaCGCGCGcgUCCacgcgucguccacgGCCGCgGCGUCu -3'
miRNA:   3'- -CGaaGCGCGUaaAGG--------------UGGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 8417 0.68 0.907357
Target:  5'- cGUUUcCGCGCAUgugCCuuugUCGCCAuCGUCu -3'
miRNA:   3'- -CGAA-GCGCGUAaa-GGu---GGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 8615 0.76 0.516844
Target:  5'- cGCaaCGCGCAccgguaggcgcUUCACCGCCACGUCu -3'
miRNA:   3'- -CGaaGCGCGUaa---------AGGUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 8710 0.67 0.940127
Target:  5'- cGCUcugcgCGCGCGUggCCGCCGUUuCGg- -3'
miRNA:   3'- -CGAa----GCGCGUAaaGGUGGCGGuGCag -5'
24385 5' -53.9 NC_005264.1 + 9478 0.79 0.372979
Target:  5'- cGCUUCGCGCGUcuugUCUGCCGCCuccccCGUg -3'
miRNA:   3'- -CGAAGCGCGUAa---AGGUGGCGGu----GCAg -5'
24385 5' -53.9 NC_005264.1 + 9709 0.68 0.901049
Target:  5'- uGUUUCGCGCcgcugagCCAuugugcCCGCCGCGg- -3'
miRNA:   3'- -CGAAGCGCGuaaa---GGU------GGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 10555 0.71 0.808228
Target:  5'- cGCggaUCGCGCGUUcgCCGCUGCUuccuCGUUc -3'
miRNA:   3'- -CGa--AGCGCGUAAa-GGUGGCGGu---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 11671 0.66 0.952849
Target:  5'- --gUCGCGCAaUUCgACCGUUaguuucucguuugGCGUCu -3'
miRNA:   3'- cgaAGCGCGUaAAGgUGGCGG-------------UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 11834 0.69 0.87127
Target:  5'- cGCUguagCGCGCAUcggacacgcggcccgUCGCCGCCAC-UCg -3'
miRNA:   3'- -CGAa---GCGCGUAaa-------------GGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 13191 0.78 0.406821
Target:  5'- cGCUgCGCGCGgaUCCgucGCCGCCGcCGUCg -3'
miRNA:   3'- -CGAaGCGCGUaaAGG---UGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 13416 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.