miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 3424 0.71 0.563155
Target:  5'- gGGAcguagGGCcGCGCCCGCGCUGCucGCAa- -3'
miRNA:   3'- gCCU-----UCGaCGCGGGUGCGGUG--UGUag -5'
24386 3' -58 NC_005264.1 + 52853 0.71 0.572136
Target:  5'- gCGGGAGCUGCGCgCAuacgacgUGCaCACGCGc- -3'
miRNA:   3'- -GCCUUCGACGCGgGU-------GCG-GUGUGUag -5'
24386 3' -58 NC_005264.1 + 127566 0.7 0.583158
Target:  5'- aGGAccacGGCcGCGCCCGCGCCAg----- -3'
miRNA:   3'- gCCU----UCGaCGCGGGUGCGGUguguag -5'
24386 3' -58 NC_005264.1 + 154115 0.7 0.613402
Target:  5'- gGGggGCgagccgaaacgGCGgCCACGCgCGCGCAg- -3'
miRNA:   3'- gCCuuCGa----------CGCgGGUGCG-GUGUGUag -5'
24386 3' -58 NC_005264.1 + 73053 0.7 0.622509
Target:  5'- gGGAuGGCUGCacauggacggaugGCCCGCGCgGCAUcUCu -3'
miRNA:   3'- gCCU-UCGACG-------------CGGGUGCGgUGUGuAG- -5'
24386 3' -58 NC_005264.1 + 120768 0.7 0.623521
Target:  5'- cCGGcgcAGCUGaCGCCaCGCGCCGCggGCAa- -3'
miRNA:   3'- -GCCu--UCGAC-GCGG-GUGCGGUG--UGUag -5'
24386 3' -58 NC_005264.1 + 19839 0.7 0.623521
Target:  5'- aGGAagAGUUGCGggucCCCACGCC-CGCcUCa -3'
miRNA:   3'- gCCU--UCGACGC----GGGUGCGGuGUGuAG- -5'
24386 3' -58 NC_005264.1 + 25900 0.7 0.633646
Target:  5'- gGGgcGCUGCGCCUucuugucCGCCACGaagCg -3'
miRNA:   3'- gCCuuCGACGCGGGu------GCGGUGUguaG- -5'
24386 3' -58 NC_005264.1 + 93439 0.7 0.633646
Target:  5'- gCGGcAGGC-GCGCCUAC-CCGCcCAUCg -3'
miRNA:   3'- -GCC-UUCGaCGCGGGUGcGGUGuGUAG- -5'
24386 3' -58 NC_005264.1 + 65939 0.7 0.633646
Target:  5'- aGGAuuuGCcGCGCCCucgcGCGCCGC-CAUg -3'
miRNA:   3'- gCCUu--CGaCGCGGG----UGCGGUGuGUAg -5'
24386 3' -58 NC_005264.1 + 60551 0.69 0.64377
Target:  5'- uGGcacGcCUGUGCCCGuuuCGCUGCACAUCg -3'
miRNA:   3'- gCCuu-C-GACGCGGGU---GCGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 126893 0.69 0.64377
Target:  5'- uGGggGCgGCGUCgGCGCCccagauGCgGCGUCg -3'
miRNA:   3'- gCCuuCGaCGCGGgUGCGG------UG-UGUAG- -5'
24386 3' -58 NC_005264.1 + 7867 0.69 0.64377
Target:  5'- uGGggGCgGCGUCgGCGCCccagauGCgGCGUCg -3'
miRNA:   3'- gCCuuCGaCGCGGgUGCGG------UG-UGUAG- -5'
24386 3' -58 NC_005264.1 + 141341 0.69 0.653885
Target:  5'- gCGacGGCgGUGCCCACGUCACAUAc- -3'
miRNA:   3'- -GCcuUCGaCGCGGGUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 54721 0.69 0.653885
Target:  5'- gGGAAGCgugGCGCUCACGUggacggaACuCAUCg -3'
miRNA:   3'- gCCUUCGa--CGCGGGUGCGg------UGuGUAG- -5'
24386 3' -58 NC_005264.1 + 7855 0.69 0.663983
Target:  5'- aGGuacAGCUGCGaggccCCCACGUUcgcuGCGCAUCu -3'
miRNA:   3'- gCCu--UCGACGC-----GGGUGCGG----UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 79629 0.69 0.663983
Target:  5'- uGGAGuGCUGCGCauCCugGCCAaACcUCg -3'
miRNA:   3'- gCCUU-CGACGCG--GGugCGGUgUGuAG- -5'
24386 3' -58 NC_005264.1 + 131652 0.69 0.663983
Target:  5'- uCGGucuGCgGUGCCCGcCGCCagaccguuggcgGCACGUCg -3'
miRNA:   3'- -GCCuu-CGaCGCGGGU-GCGG------------UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 133522 0.69 0.674056
Target:  5'- aGGAGgcGCUGUGUCCAUGCaugGCGCAa- -3'
miRNA:   3'- gCCUU--CGACGCGGGUGCGg--UGUGUag -5'
24386 3' -58 NC_005264.1 + 158059 0.69 0.674056
Target:  5'- uGGAGG-UGCGCgaaCgGCGCCGCGCAg- -3'
miRNA:   3'- gCCUUCgACGCG---GgUGCGGUGUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.