miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 120310 1.1 0.0016
Target:  5'- gCGGAAGCUGCGCCCACGCCACACAUCa -3'
miRNA:   3'- -GCCUUCGACGCGGGUGCGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 68215 0.79 0.19826
Target:  5'- aCGGAaaacAGC-GCGUCCACGCCGCACcgCc -3'
miRNA:   3'- -GCCU----UCGaCGCGGGUGCGGUGUGuaG- -5'
24386 3' -58 NC_005264.1 + 120090 0.76 0.318316
Target:  5'- gCGGGAGUcGUGCCCACcggguGCCGCGCAg- -3'
miRNA:   3'- -GCCUUCGaCGCGGGUG-----CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 142695 0.74 0.396257
Target:  5'- uGGGcgccGGCgGCGCgCCACGCCugccCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGUGCGGu---GUGUAG- -5'
24386 3' -58 NC_005264.1 + 147249 0.73 0.428051
Target:  5'- cCGGAgccgcAGCUGCGCCCGCaagcuuggccacgaGCUGCACGc- -3'
miRNA:   3'- -GCCU-----UCGACGCGGGUG--------------CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 105806 0.73 0.430694
Target:  5'- -aGAGGUcGCGaCCCACgGCUACACAUCa -3'
miRNA:   3'- gcCUUCGaCGC-GGGUG-CGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 112614 0.72 0.494921
Target:  5'- uGGGAGCgGgGCCCGCcgGUCACGCAa- -3'
miRNA:   3'- gCCUUCGaCgCGGGUG--CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 66178 0.72 0.504457
Target:  5'- cCGGggG-UGCGCUaACGCCGCGCGc- -3'
miRNA:   3'- -GCCuuCgACGCGGgUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 63646 0.72 0.504457
Target:  5'- gCGGAGGcCUGCGaggacCCCACGuCUACGCcgCg -3'
miRNA:   3'- -GCCUUC-GACGC-----GGGUGC-GGUGUGuaG- -5'
24386 3' -58 NC_005264.1 + 127333 0.72 0.514072
Target:  5'- aCGGggGCaccUGCGCCgCgGCGUCGC-CGUCg -3'
miRNA:   3'- -GCCuuCG---ACGCGG-G-UGCGGUGuGUAG- -5'
24386 3' -58 NC_005264.1 + 8306 0.72 0.514072
Target:  5'- aCGGggGCaccUGCGCCgCgGCGUCGC-CGUCg -3'
miRNA:   3'- -GCCuuCG---ACGCGG-G-UGCGGUGuGUAG- -5'
24386 3' -58 NC_005264.1 + 3867 0.72 0.514072
Target:  5'- gGGAuugGGCUGC-CCCACGUCuccgucuuCGCGUCg -3'
miRNA:   3'- gCCU---UCGACGcGGGUGCGGu-------GUGUAG- -5'
24386 3' -58 NC_005264.1 + 156513 0.71 0.523761
Target:  5'- -cGAGGaCUGCGUgUACGCCACGCGa- -3'
miRNA:   3'- gcCUUC-GACGCGgGUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 154407 0.71 0.523761
Target:  5'- ---cAGUUGCGCCgGCGCCAUguucugGCAUCa -3'
miRNA:   3'- gccuUCGACGCGGgUGCGGUG------UGUAG- -5'
24386 3' -58 NC_005264.1 + 35380 0.71 0.523761
Target:  5'- ---cAGUUGCGCCgGCGCCAUguucugGCAUCa -3'
miRNA:   3'- gccuUCGACGCGGgUGCGGUG------UGUAG- -5'
24386 3' -58 NC_005264.1 + 45407 0.71 0.533519
Target:  5'- uGGAgGGCgGCGCCCugcGCGCCGCgACAg- -3'
miRNA:   3'- gCCU-UCGaCGCGGG---UGCGGUG-UGUag -5'
24386 3' -58 NC_005264.1 + 6138 0.71 0.563155
Target:  5'- aGGGcgagGGCcGCGCgCC-CGUCGCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGuGCGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 122451 0.71 0.563155
Target:  5'- gGGAcguagGGCcGCGCCCGCGCUGCucGCAa- -3'
miRNA:   3'- gCCU-----UCGaCGCGGGUGCGGUG--UGUag -5'
24386 3' -58 NC_005264.1 + 3424 0.71 0.563155
Target:  5'- gGGAcguagGGCcGCGCCCGCGCUGCucGCAa- -3'
miRNA:   3'- gCCU-----UCGaCGCGGGUGCGGUG--UGUag -5'
24386 3' -58 NC_005264.1 + 125165 0.71 0.563155
Target:  5'- aGGGcgagGGCcGCGCgCC-CGUCGCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGuGCGGUGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.