miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 138746 0.69 0.684095
Target:  5'- aCGu--GCUGUGCCCAUGgCACGCuguUCg -3'
miRNA:   3'- -GCcuuCGACGCGGGUGCgGUGUGu--AG- -5'
24386 3' -58 NC_005264.1 + 19839 0.7 0.623521
Target:  5'- aGGAagAGUUGCGggucCCCACGCC-CGCcUCa -3'
miRNA:   3'- gCCU--UCGACGC----GGGUGCGGuGUGuAG- -5'
24386 3' -58 NC_005264.1 + 93439 0.7 0.633646
Target:  5'- gCGGcAGGC-GCGCCUAC-CCGCcCAUCg -3'
miRNA:   3'- -GCC-UUCGaCGCGGGUGcGGUGuGUAG- -5'
24386 3' -58 NC_005264.1 + 65939 0.7 0.633646
Target:  5'- aGGAuuuGCcGCGCCCucgcGCGCCGC-CAUg -3'
miRNA:   3'- gCCUu--CGaCGCGGG----UGCGGUGuGUAg -5'
24386 3' -58 NC_005264.1 + 126893 0.69 0.64377
Target:  5'- uGGggGCgGCGUCgGCGCCccagauGCgGCGUCg -3'
miRNA:   3'- gCCuuCGaCGCGGgUGCGG------UG-UGUAG- -5'
24386 3' -58 NC_005264.1 + 141341 0.69 0.653885
Target:  5'- gCGacGGCgGUGCCCACGUCACAUAc- -3'
miRNA:   3'- -GCcuUCGaCGCGGGUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 7855 0.69 0.663983
Target:  5'- aGGuacAGCUGCGaggccCCCACGUUcgcuGCGCAUCu -3'
miRNA:   3'- gCCu--UCGACGC-----GGGUGCGG----UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 133522 0.69 0.674056
Target:  5'- aGGAGgcGCUGUGUCCAUGCaugGCGCAa- -3'
miRNA:   3'- gCCUU--CGACGCGGGUGCGg--UGUGUag -5'
24386 3' -58 NC_005264.1 + 124483 0.69 0.684095
Target:  5'- aGGAGGUccuaacCGCCC-CGCCGCccaGCAUCa -3'
miRNA:   3'- gCCUUCGac----GCGGGuGCGGUG---UGUAG- -5'
24386 3' -58 NC_005264.1 + 73053 0.7 0.622509
Target:  5'- gGGAuGGCUGCacauggacggaugGCCCGCGCgGCAUcUCu -3'
miRNA:   3'- gCCU-UCGACG-------------CGGGUGCGgUGUGuAG- -5'
24386 3' -58 NC_005264.1 + 119020 0.71 0.563155
Target:  5'- cCGcAGGUUGCGCgCCACGCUAUAUcgCg -3'
miRNA:   3'- -GCcUUCGACGCG-GGUGCGGUGUGuaG- -5'
24386 3' -58 NC_005264.1 + 125165 0.71 0.563155
Target:  5'- aGGGcgagGGCcGCGCgCC-CGUCGCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGuGCGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 142695 0.74 0.396257
Target:  5'- uGGGcgccGGCgGCGCgCCACGCCugccCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGUGCGGu---GUGUAG- -5'
24386 3' -58 NC_005264.1 + 147249 0.73 0.428051
Target:  5'- cCGGAgccgcAGCUGCGCCCGCaagcuuggccacgaGCUGCACGc- -3'
miRNA:   3'- -GCCU-----UCGACGCGGGUG--------------CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 112614 0.72 0.494921
Target:  5'- uGGGAGCgGgGCCCGCcgGUCACGCAa- -3'
miRNA:   3'- gCCUUCGaCgCGGGUG--CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 63646 0.72 0.504457
Target:  5'- gCGGAGGcCUGCGaggacCCCACGuCUACGCcgCg -3'
miRNA:   3'- -GCCUUC-GACGC-----GGGUGC-GGUGUGuaG- -5'
24386 3' -58 NC_005264.1 + 3867 0.72 0.514072
Target:  5'- gGGAuugGGCUGC-CCCACGUCuccgucuuCGCGUCg -3'
miRNA:   3'- gCCU---UCGACGcGGGUGCGGu-------GUGUAG- -5'
24386 3' -58 NC_005264.1 + 127333 0.72 0.514072
Target:  5'- aCGGggGCaccUGCGCCgCgGCGUCGC-CGUCg -3'
miRNA:   3'- -GCCuuCG---ACGCGG-G-UGCGGUGuGUAG- -5'
24386 3' -58 NC_005264.1 + 154407 0.71 0.523761
Target:  5'- ---cAGUUGCGCCgGCGCCAUguucugGCAUCa -3'
miRNA:   3'- gccuUCGACGCGGgUGCGGUG------UGUAG- -5'
24386 3' -58 NC_005264.1 + 122451 0.71 0.563155
Target:  5'- gGGAcguagGGCcGCGCCCGCGCUGCucGCAa- -3'
miRNA:   3'- gCCU-----UCGaCGCGGGUGCGGUG--UGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.