miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 2836 0.66 0.841163
Target:  5'- gCGGAgggccGGUcGCGCUCGCGCCGuCGCc-- -3'
miRNA:   3'- -GCCU-----UCGaCGCGGGUGCGGU-GUGuag -5'
24386 3' -58 NC_005264.1 + 3424 0.71 0.563155
Target:  5'- gGGAcguagGGCcGCGCCCGCGCUGCucGCAa- -3'
miRNA:   3'- gCCU-----UCGaCGCGGGUGCGGUG--UGUag -5'
24386 3' -58 NC_005264.1 + 3471 0.67 0.789819
Target:  5'- uCGGggGCgaUGgGCUUGcCGCCGCACGc- -3'
miRNA:   3'- -GCCuuCG--ACgCGGGU-GCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 3867 0.72 0.514072
Target:  5'- gGGAuugGGCUGC-CCCACGUCuccgucuuCGCGUCg -3'
miRNA:   3'- gCCU---UCGACGcGGGUGCGGu-------GUGUAG- -5'
24386 3' -58 NC_005264.1 + 4151 0.67 0.798771
Target:  5'- uCGcGAuGCuUGcCGCCCACGCCGCGg--- -3'
miRNA:   3'- -GC-CUuCG-AC-GCGGGUGCGGUGUguag -5'
24386 3' -58 NC_005264.1 + 5146 0.66 0.816226
Target:  5'- -cGAuGC-GCGgCCGCGCCGCAuCGUCc -3'
miRNA:   3'- gcCUuCGaCGCgGGUGCGGUGU-GUAG- -5'
24386 3' -58 NC_005264.1 + 5456 0.69 0.684095
Target:  5'- aGGAGGUccuaacCGCCC-CGCCGCccaGCAUCa -3'
miRNA:   3'- gCCUUCGac----GCGGGuGCGGUG---UGUAG- -5'
24386 3' -58 NC_005264.1 + 6138 0.71 0.563155
Target:  5'- aGGGcgagGGCcGCGCgCC-CGUCGCGCAUCg -3'
miRNA:   3'- gCCU----UCGaCGCG-GGuGCGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 6639 0.66 0.828059
Target:  5'- uGGAc-CUGCGCCCcgacauauagccggcGcCGCCACGCcgCa -3'
miRNA:   3'- gCCUucGACGCGGG---------------U-GCGGUGUGuaG- -5'
24386 3' -58 NC_005264.1 + 6875 0.68 0.713926
Target:  5'- aCGGcAGCcagaGCGUCCGCgaGCCGCGCAg- -3'
miRNA:   3'- -GCCuUCGa---CGCGGGUG--CGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 7855 0.69 0.663983
Target:  5'- aGGuacAGCUGCGaggccCCCACGUUcgcuGCGCAUCu -3'
miRNA:   3'- gCCu--UCGACGC-----GGGUGCGG----UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 7867 0.69 0.64377
Target:  5'- uGGggGCgGCGUCgGCGCCccagauGCgGCGUCg -3'
miRNA:   3'- gCCuuCGaCGCGGgUGCGG------UG-UGUAG- -5'
24386 3' -58 NC_005264.1 + 8306 0.72 0.514072
Target:  5'- aCGGggGCaccUGCGCCgCgGCGUCGC-CGUCg -3'
miRNA:   3'- -GCCuuCG---ACGCGG-G-UGCGGUGuGUAG- -5'
24386 3' -58 NC_005264.1 + 9684 0.69 0.684095
Target:  5'- gGGAGGCgggcucGCGCCUcgacgcuguuucGCGCCGCugAg- -3'
miRNA:   3'- gCCUUCGa-----CGCGGG------------UGCGGUGugUag -5'
24386 3' -58 NC_005264.1 + 11301 0.68 0.713926
Target:  5'- aGGGuAGg-GCGUCCACGCCGCcCAUg -3'
miRNA:   3'- gCCU-UCgaCGCGGGUGCGGUGuGUAg -5'
24386 3' -58 NC_005264.1 + 11377 0.67 0.76216
Target:  5'- gCGGAAGaacGCGgCCGCGUCGCGgAUg -3'
miRNA:   3'- -GCCUUCga-CGCgGGUGCGGUGUgUAg -5'
24386 3' -58 NC_005264.1 + 13927 0.67 0.76216
Target:  5'- aGGAggcaaAGCUGCcgcagcaaGUCUAUGCCACGCGg- -3'
miRNA:   3'- gCCU-----UCGACG--------CGGGUGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 19839 0.7 0.623521
Target:  5'- aGGAagAGUUGCGggucCCCACGCC-CGCcUCa -3'
miRNA:   3'- gCCU--UCGACGC----GGGUGCGGuGUGuAG- -5'
24386 3' -58 NC_005264.1 + 20505 0.67 0.789819
Target:  5'- gCGGucGCUGCGCCgAgaaGCCaggggcACGCGUUg -3'
miRNA:   3'- -GCCuuCGACGCGGgUg--CGG------UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 25634 0.66 0.849112
Target:  5'- gCGGuggGGCcGCGCuCCGCGUUuuccucaaucgGCACGUCu -3'
miRNA:   3'- -GCCu--UCGaCGCG-GGUGCGG-----------UGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.