miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24386 3' -58 NC_005264.1 + 121862 0.66 0.841163
Target:  5'- gCGGAgggccGGUcGCGCUCGCGCCGuCGCc-- -3'
miRNA:   3'- -GCCU-----UCGaCGCGGGUGCGGU-GUGuag -5'
24386 3' -58 NC_005264.1 + 32746 0.66 0.833027
Target:  5'- aGGggGCggcaccCGCCUACGUCACuu-UCg -3'
miRNA:   3'- gCCuuCGac----GCGGGUGCGGUGuguAG- -5'
24386 3' -58 NC_005264.1 + 162583 0.66 0.833027
Target:  5'- uGGGcuucuGCcGCGUCCAgcgcCGCCGCACAa- -3'
miRNA:   3'- gCCUu----CGaCGCGGGU----GCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 25634 0.66 0.849112
Target:  5'- gCGGuggGGCcGCGCuCCGCGUUuuccucaaucgGCACGUCu -3'
miRNA:   3'- -GCCu--UCGaCGCG-GGUGCGG-----------UGUGUAG- -5'
24386 3' -58 NC_005264.1 + 36657 0.66 0.841163
Target:  5'- uCGGuAAGCcaaccUGCGgCUGCGCCAUAC-UCu -3'
miRNA:   3'- -GCC-UUCG-----ACGCgGGUGCGGUGUGuAG- -5'
24386 3' -58 NC_005264.1 + 151772 0.66 0.833027
Target:  5'- aGGggGCggcaccCGCCUACGUCACuu-UCg -3'
miRNA:   3'- gCCuuCGac----GCGGGUGCGGUGuguAG- -5'
24386 3' -58 NC_005264.1 + 2836 0.66 0.841163
Target:  5'- gCGGAgggccGGUcGCGCUCGCGCCGuCGCc-- -3'
miRNA:   3'- -GCCU-----UCGaCGCGGGUGCGGU-GUGuag -5'
24386 3' -58 NC_005264.1 + 125540 0.66 0.841163
Target:  5'- gCGGGuguuGCUGCGgCUGCGgCGCAUAa- -3'
miRNA:   3'- -GCCUu---CGACGCgGGUGCgGUGUGUag -5'
24386 3' -58 NC_005264.1 + 115960 0.66 0.83793
Target:  5'- aGGAGGUacgcgGCGCCCgacagggacgcugaACGCCAggccgugUGCGUCg -3'
miRNA:   3'- gCCUUCGa----CGCGGG--------------UGCGGU-------GUGUAG- -5'
24386 3' -58 NC_005264.1 + 59799 0.66 0.840357
Target:  5'- aGGggGCgcguaGCGCaCCaugcuugccgguaGCGCCGCACc-- -3'
miRNA:   3'- gCCuuCGa----CGCG-GG-------------UGCGGUGUGuag -5'
24386 3' -58 NC_005264.1 + 64400 0.66 0.815368
Target:  5'- uGGAAGCccgGCcaagGCCgACGCCGCgggcacggcgaugACGUCu -3'
miRNA:   3'- gCCUUCGa--CG----CGGgUGCGGUG-------------UGUAG- -5'
24386 3' -58 NC_005264.1 + 52929 0.66 0.824712
Target:  5'- aGGGgcauugcauGGCcGCGCCCGCGgCGCAUu-- -3'
miRNA:   3'- gCCU---------UCGaCGCGGGUGCgGUGUGuag -5'
24386 3' -58 NC_005264.1 + 152281 0.66 0.819641
Target:  5'- aGGAAGCagcgGCgaacgcgcgauccgcGCCCcugagggcgGCGCCGCACAg- -3'
miRNA:   3'- gCCUUCGa---CG---------------CGGG---------UGCGGUGUGUag -5'
24386 3' -58 NC_005264.1 + 85782 0.66 0.81879
Target:  5'- gCGGggGCUGUuaagcuugaucaacuGCaCCcuuccuagcguuaGCGCaCGCGCGUCa -3'
miRNA:   3'- -GCCuuCGACG---------------CG-GG-------------UGCG-GUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 139170 0.66 0.833027
Target:  5'- aGGAgAGCauagaagGCGCCCAuacCGCCAUGCcgGUCc -3'
miRNA:   3'- gCCU-UCGa------CGCGGGU---GCGGUGUG--UAG- -5'
24386 3' -58 NC_005264.1 + 6639 0.66 0.828059
Target:  5'- uGGAc-CUGCGCCCcgacauauagccggcGcCGCCACGCcgCa -3'
miRNA:   3'- gCCUucGACGCGGG---------------U-GCGGUGUGuaG- -5'
24386 3' -58 NC_005264.1 + 5146 0.66 0.816226
Target:  5'- -cGAuGC-GCGgCCGCGCCGCAuCGUCc -3'
miRNA:   3'- gcCUuCGaCGCgGGUGCGGUGU-GUAG- -5'
24386 3' -58 NC_005264.1 + 55273 0.66 0.824712
Target:  5'- --aGAGCUgggGCGCgCUAgGCCGCACGUUa -3'
miRNA:   3'- gccUUCGA---CGCG-GGUgCGGUGUGUAG- -5'
24386 3' -58 NC_005264.1 + 67361 0.66 0.822184
Target:  5'- gCGGAAaacGUaGCGCCCGCGCUcgcugcgcccgccgGCGCGg- -3'
miRNA:   3'- -GCCUU---CGaCGCGGGUGCGG--------------UGUGUag -5'
24386 3' -58 NC_005264.1 + 75099 0.66 0.836303
Target:  5'- gCGGcAGGCgccgGCGCCgagcuggggcgcaguCAaaugGCCGCGCGUCa -3'
miRNA:   3'- -GCC-UUCGa---CGCGG---------------GUg---CGGUGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.