miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24387 5' -56.4 NC_005264.1 + 79419 0.66 0.91231
Target:  5'- ---cGCGGCgGAACCCA--GCGUGGg -3'
miRNA:   3'- gagaUGCCGgCUUGGGUccUGCACUg -5'
24387 5' -56.4 NC_005264.1 + 138176 0.66 0.906324
Target:  5'- ---gGCGGUCGAACCgCAGGugGccaGAa -3'
miRNA:   3'- gagaUGCCGGCUUGG-GUCCugCa--CUg -5'
24387 5' -56.4 NC_005264.1 + 58989 0.66 0.900109
Target:  5'- aUCcccCGGCCGGGCCCAGaaGCuUGGCg -3'
miRNA:   3'- gAGau-GCCGGCUUGGGUCc-UGcACUG- -5'
24387 5' -56.4 NC_005264.1 + 81625 0.66 0.893666
Target:  5'- ---gACGGCCGAugcucauauGCCuCGcGGugGUGAUg -3'
miRNA:   3'- gagaUGCCGGCU---------UGG-GU-CCugCACUG- -5'
24387 5' -56.4 NC_005264.1 + 5935 0.67 0.887
Target:  5'- aUCUaaccACGGcCCGAACCCGcGGCGUugccuguuGACg -3'
miRNA:   3'- gAGA----UGCC-GGCUUGGGUcCUGCA--------CUG- -5'
24387 5' -56.4 NC_005264.1 + 5274 0.67 0.880114
Target:  5'- gUC-GCGGCCGGACggCGGGGCGgcGGCu -3'
miRNA:   3'- gAGaUGCCGGCUUGg-GUCCUGCa-CUG- -5'
24387 5' -56.4 NC_005264.1 + 124301 0.67 0.880114
Target:  5'- gUC-GCGGCCGGACggCGGGGCGgcGGCu -3'
miRNA:   3'- gAGaUGCCGGCUUGg-GUCCUGCa-CUG- -5'
24387 5' -56.4 NC_005264.1 + 37607 0.67 0.875878
Target:  5'- uCUCUGaccugauacaaggcuUGGCCGcuCUacacaAGGACGUGGCg -3'
miRNA:   3'- -GAGAU---------------GCCGGCuuGGg----UCCUGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 100479 0.67 0.873012
Target:  5'- gUCgcgGCGGCCaGGGCCCuGGAgGgguugcgGGCg -3'
miRNA:   3'- gAGa--UGCCGG-CUUGGGuCCUgCa------CUG- -5'
24387 5' -56.4 NC_005264.1 + 162253 0.67 0.873012
Target:  5'- -gCUACGGCgGGGCUgGcGGGCG-GACu -3'
miRNA:   3'- gaGAUGCCGgCUUGGgU-CCUGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 102155 0.67 0.873012
Target:  5'- cCUCUGCggaGGCCuuggGAGCCCAGcuGCGcGACg -3'
miRNA:   3'- -GAGAUG---CCGG----CUUGGGUCc-UGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 80622 0.67 0.873012
Target:  5'- uUCUugGGCC---CCgAGGACGaugGACg -3'
miRNA:   3'- gAGAugCCGGcuuGGgUCCUGCa--CUG- -5'
24387 5' -56.4 NC_005264.1 + 43226 0.67 0.873012
Target:  5'- -gCUACGGCgGGGCUgGcGGGCG-GACu -3'
miRNA:   3'- gaGAUGCCGgCUUGGgU-CCUGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 45122 0.67 0.865699
Target:  5'- uCUCUGugcuCGGCaCGcuaguAUCCGGGGCgGUGACg -3'
miRNA:   3'- -GAGAU----GCCG-GCu----UGGGUCCUG-CACUG- -5'
24387 5' -56.4 NC_005264.1 + 33067 0.67 0.865699
Target:  5'- aUCUGCGacGUCGcgguGCCCGGGGCG-GAUu -3'
miRNA:   3'- gAGAUGC--CGGCu---UGGGUCCUGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 13797 0.67 0.855886
Target:  5'- ---aACGGU-GAACCCgggcagggggcuguGGGACGUGGCg -3'
miRNA:   3'- gagaUGCCGgCUUGGG--------------UCCUGCACUG- -5'
24387 5' -56.4 NC_005264.1 + 101744 0.67 0.850463
Target:  5'- gUCUugGCGGCgCGcuCCCcaaAGGACGUGGu -3'
miRNA:   3'- gAGA--UGCCG-GCuuGGG---UCCUGCACUg -5'
24387 5' -56.4 NC_005264.1 + 159020 0.68 0.834453
Target:  5'- -cCUGCGGCCccGCCCGGGcccgaacucGCG-GACc -3'
miRNA:   3'- gaGAUGCCGGcuUGGGUCC---------UGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 39993 0.68 0.834453
Target:  5'- -cCUGCGGCCccGCCCGGGcccgaacucGCG-GACc -3'
miRNA:   3'- gaGAUGCCGGcuUGGGUCC---------UGCaCUG- -5'
24387 5' -56.4 NC_005264.1 + 121894 0.68 0.817724
Target:  5'- -gCUGCGGCUGcgaucgaCCGGGGCGcGGCg -3'
miRNA:   3'- gaGAUGCCGGCuug----GGUCCUGCaCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.