Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24388 | 5' | -61.2 | NC_005264.1 | + | 2473 | 0.66 | 0.671975 |
Target: 5'- gGCcUUCGCGGCUgcuucgacgauggucGGCGGGC---CUCg -3' miRNA: 3'- aCGuGAGCGCCGA---------------CCGCCCGcuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 2849 | 0.66 | 0.658141 |
Target: 5'- cGCGCUCGCGccgucgcccGCU-GCGGcuGCGAUCg- -3' miRNA: 3'- aCGUGAGCGC---------CGAcCGCC--CGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 2889 | 0.68 | 0.578959 |
Target: 5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3' miRNA: 3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 3713 | 0.71 | 0.412754 |
Target: 5'- aGUACUUGCcGCgGGCGGGCu-UCUCc -3' miRNA: 3'- aCGUGAGCGcCGaCCGCCCGcuAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 3987 | 0.66 | 0.687711 |
Target: 5'- aGcCGCUUcgGCGGC-GGCGGGU--UCUCu -3' miRNA: 3'- aC-GUGAG--CGCCGaCCGCCCGcuAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 4607 | 0.71 | 0.379896 |
Target: 5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3' miRNA: 3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 9902 | 0.67 | 0.628394 |
Target: 5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3' miRNA: 3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 16408 | 0.66 | 0.668027 |
Target: 5'- gGCACUCG-GGgaGGCaaGGGCcg-CUCg -3' miRNA: 3'- aCGUGAGCgCCgaCCG--CCCGcuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 17351 | 0.67 | 0.59867 |
Target: 5'- gUGC-CUucCGCGGCagcuggcGGCGGcGCGGUCUg -3' miRNA: 3'- -ACGuGA--GCGCCGa------CCGCC-CGCUAGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 22231 | 0.68 | 0.578959 |
Target: 5'- cGC-CUCGuCGGC-GGUcuGGGCGGUCg- -3' miRNA: 3'- aCGuGAGC-GCCGaCCG--CCCGCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 26361 | 0.7 | 0.46518 |
Target: 5'- gUGCGC-CGCGGCaGGCugcgcGGCGccGUCUCu -3' miRNA: 3'- -ACGUGaGCGCCGaCCGc----CCGC--UAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 34481 | 0.68 | 0.55647 |
Target: 5'- cGCGCUUcaggaggacguucgGCGGgaaUGGgGGGCGGUgUCa -3' miRNA: 3'- aCGUGAG--------------CGCCg--ACCgCCCGCUAgAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 35789 | 0.66 | 0.647243 |
Target: 5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3' miRNA: 3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 37142 | 0.66 | 0.677887 |
Target: 5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3' miRNA: 3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 37220 | 0.68 | 0.55939 |
Target: 5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3' miRNA: 3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 37584 | 0.74 | 0.248919 |
Target: 5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3' miRNA: 3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 43225 | 0.74 | 0.254774 |
Target: 5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3' miRNA: 3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 48085 | 0.66 | 0.677887 |
Target: 5'- cGCaauACUCGCGGCcGcGCGGGU--UCUg -3' miRNA: 3'- aCG---UGAGCGCCGaC-CGCCCGcuAGAg -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 51109 | 0.66 | 0.657151 |
Target: 5'- cUGCggucuGCUCGCGccucgacGCUGGCGGGCa----- -3' miRNA: 3'- -ACG-----UGAGCGC-------CGACCGCCCGcuagag -5' |
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24388 | 5' | -61.2 | NC_005264.1 | + | 66469 | 0.67 | 0.637325 |
Target: 5'- gGCACcgcCGCGGCcagacucaaugcuUGGCGGGCugcgcggcGcgCUCg -3' miRNA: 3'- aCGUGa--GCGCCG-------------ACCGCCCG--------CuaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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