miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24388 5' -61.2 NC_005264.1 + 162252 0.74 0.254774
Target:  5'- gGCuACggCGgGGCUGGCGGGCGGaCUa -3'
miRNA:   3'- aCG-UGa-GCgCCGACCGCCCGCUaGAg -5'
24388 5' -61.2 NC_005264.1 + 156611 0.74 0.248919
Target:  5'- gGCAaguCUCGCGGCggccgcGGCGGGgGGUCa- -3'
miRNA:   3'- aCGU---GAGCGCCGa-----CCGCCCgCUAGag -5'
24388 5' -61.2 NC_005264.1 + 156422 0.73 0.305728
Target:  5'- aGUGCcUGCGGCUGGCGGcgGUGAUCg- -3'
miRNA:   3'- aCGUGaGCGCCGACCGCC--CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 156247 0.68 0.55939
Target:  5'- cGCGCUCGCcguugaccugucGGCcccUGGgGGGCGcAUCa- -3'
miRNA:   3'- aCGUGAGCG------------CCG---ACCgCCCGC-UAGag -5'
24388 5' -61.2 NC_005264.1 + 156169 0.66 0.677887
Target:  5'- gGC-CUCGCuGCUGGCGccagGAUCUCu -3'
miRNA:   3'- aCGuGAGCGcCGACCGCccg-CUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 156168 0.66 0.70722
Target:  5'- cGCAUaugCGCGGCUuugcGGCGuGGCGGc--- -3'
miRNA:   3'- aCGUGa--GCGCCGA----CCGC-CCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 154815 0.66 0.647243
Target:  5'- gGCGCg-GUGGCgccgucgUGGCGGGCGc-CUCu -3'
miRNA:   3'- aCGUGagCGCCG-------ACCGCCCGCuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 146774 0.66 0.677887
Target:  5'- aGCGCcgCGCGGCgguucucGGUGcGGCGGUgUg -3'
miRNA:   3'- aCGUGa-GCGCCGa------CCGC-CCGCUAgAg -5'
24388 5' -61.2 NC_005264.1 + 140142 0.69 0.477908
Target:  5'- cGCACUCGUGGCUauucauagguuucgaGGaagaGcGGCGAgacgCUCg -3'
miRNA:   3'- aCGUGAGCGCCGA---------------CCg---C-CCGCUa---GAG- -5'
24388 5' -61.2 NC_005264.1 + 139732 0.67 0.638317
Target:  5'- -uCGCUCGUuGGgaGGCGGGCGGc--- -3'
miRNA:   3'- acGUGAGCG-CCgaCCGCCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 135940 0.68 0.549673
Target:  5'- gGCACagGCGGCcGG-GGGCGAgcgaauuaCUCg -3'
miRNA:   3'- aCGUGagCGCCGaCCgCCCGCUa-------GAG- -5'
24388 5' -61.2 NC_005264.1 + 129588 0.68 0.529448
Target:  5'- cGCGCUCuGCaGGCgcugcGGCGcGGCGGcgaagcuUCUCg -3'
miRNA:   3'- aCGUGAG-CG-CCGa----CCGC-CCGCU-------AGAG- -5'
24388 5' -61.2 NC_005264.1 + 128928 0.67 0.628394
Target:  5'- aGCcCUgGCGGCagaaaGGCGGcGCuAUCUCg -3'
miRNA:   3'- aCGuGAgCGCCGa----CCGCC-CGcUAGAG- -5'
24388 5' -61.2 NC_005264.1 + 127836 0.7 0.43852
Target:  5'- uUGC-CUcCGCGGC-GGCcGGCGGUCUa -3'
miRNA:   3'- -ACGuGA-GCGCCGaCCGcCCGCUAGAg -5'
24388 5' -61.2 NC_005264.1 + 123634 0.71 0.379896
Target:  5'- aGCGC-CGCGGC-GGCGuaGGCGcguUCUCg -3'
miRNA:   3'- aCGUGaGCGCCGaCCGC--CCGCu--AGAG- -5'
24388 5' -61.2 NC_005264.1 + 123484 0.66 0.677887
Target:  5'- gGCAUgcgguggccgCGCGGUUGcUGGGCGAUgugCUCg -3'
miRNA:   3'- aCGUGa---------GCGCCGACcGCCCGCUA---GAG- -5'
24388 5' -61.2 NC_005264.1 + 121915 0.68 0.578959
Target:  5'- gGCGCggCGCGGCgGGgaGGGCGAc--- -3'
miRNA:   3'- aCGUGa-GCGCCGaCCg-CCCGCUagag -5'
24388 5' -61.2 NC_005264.1 + 121875 0.66 0.658141
Target:  5'- cGCGCUCGCGccgucgcccGCU-GCGGcuGCGAUCg- -3'
miRNA:   3'- aCGUGAGCGC---------CGAcCGCC--CGCUAGag -5'
24388 5' -61.2 NC_005264.1 + 121500 0.66 0.671975
Target:  5'- gGCcUUCGCGGCUgcuucgacgauggucGGCGGGC---CUCg -3'
miRNA:   3'- aCGuGAGCGCCGA---------------CCGCCCGcuaGAG- -5'
24388 5' -61.2 NC_005264.1 + 119422 1.09 0.00089
Target:  5'- uUGCACUCGCGGCUGGCGGGCGAUCUCg -3'
miRNA:   3'- -ACGUGAGCGCCGACCGCCCGCUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.