miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24392 3' -58.1 NC_005264.1 + 162248 0.67 0.744064
Target:  5'- -gGGGGGCUac-G-GCGGGGCUGGCGg -3'
miRNA:   3'- ugUUCCUGGgauCgCGUCUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 161321 0.66 0.834105
Target:  5'- cGCGGGGcCCCaaaaaacGGCGCAGccAGC-GGCGu -3'
miRNA:   3'- -UGUUCCuGGGa------UCGCGUC--UCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 159078 0.66 0.79981
Target:  5'- cCAAGGGCCCgcAGCGCcccGGC-GGCa -3'
miRNA:   3'- uGUUCCUGGGa-UCGCGuc-UCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 157363 0.68 0.714766
Target:  5'- ---cGGGCCCUGGCcgugauGCuGGGCggcggGGCGg -3'
miRNA:   3'- uguuCCUGGGAUCG------CGuCUCGa----CCGC- -5'
24392 3' -58.1 NC_005264.1 + 155241 0.66 0.807753
Target:  5'- gGCGGGGGaugaggaagcaucUCCgcagcGGCGCGGGGUaGGCGg -3'
miRNA:   3'- -UGUUCCU-------------GGGa----UCGCGUCUCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 154590 0.67 0.753649
Target:  5'- cCAGGGcGCCgCUGGC-CAGAcuaaccgcGCUGGCGu -3'
miRNA:   3'- uGUUCC-UGG-GAUCGcGUCU--------CGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 153324 0.69 0.634223
Target:  5'- uCGAGGGCCCcucgagGGCGCcgcgccuGAcGCUGGCu -3'
miRNA:   3'- uGUUCCUGGGa-----UCGCGu------CU-CGACCGc -5'
24392 3' -58.1 NC_005264.1 + 146667 0.66 0.834105
Target:  5'- cGCGAccGACCUccGCGCAGGGC-GGCa -3'
miRNA:   3'- -UGUUc-CUGGGauCGCGUCUCGaCCGc -5'
24392 3' -58.1 NC_005264.1 + 145994 0.68 0.694872
Target:  5'- aACGAGGGCCuCUAcggcguGCGCGuuauGGGCUcgGGCGa -3'
miRNA:   3'- -UGUUCCUGG-GAU------CGCGU----CUCGA--CCGC- -5'
24392 3' -58.1 NC_005264.1 + 133267 0.75 0.317836
Target:  5'- -aAAGGACgC-AGCGaCGGGGCUGGCGa -3'
miRNA:   3'- ugUUCCUGgGaUCGC-GUCUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 131706 0.7 0.603766
Target:  5'- aGCGuGGGCCU--GCGCGGcguuGCUGGCGc -3'
miRNA:   3'- -UGUuCCUGGGauCGCGUCu---CGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 125693 0.66 0.808628
Target:  5'- gGCAGaGAUCCUGGCGCcAGcAGCgaGGCc -3'
miRNA:   3'- -UGUUcCUGGGAUCGCG-UC-UCGa-CCGc -5'
24392 3' -58.1 NC_005264.1 + 124966 0.7 0.593645
Target:  5'- gGCucGGAacCCCUcGCGCAGGGCagcGGCGc -3'
miRNA:   3'- -UGuuCCU--GGGAuCGCGUCUCGa--CCGC- -5'
24392 3' -58.1 NC_005264.1 + 124314 0.66 0.817289
Target:  5'- gGCGGGGcggcggcugACCCgUGGgGCGGGcGaCUGGCGg -3'
miRNA:   3'- -UGUUCC---------UGGG-AUCgCGUCU-C-GACCGC- -5'
24392 3' -58.1 NC_005264.1 + 123698 0.66 0.834105
Target:  5'- uCAGGGAauaCCU-GCGuCGGGGCgagUGGCGc -3'
miRNA:   3'- uGUUCCUg--GGAuCGC-GUCUCG---ACCGC- -5'
24392 3' -58.1 NC_005264.1 + 118248 1.08 0.002123
Target:  5'- aACAAGGACCCUAGCGCAGAGCUGGCGu -3'
miRNA:   3'- -UGUUCCUGGGAUCGCGUCUCGACCGC- -5'
24392 3' -58.1 NC_005264.1 + 116406 0.67 0.772492
Target:  5'- cGCAGGccGACgUcgAGCGCAGGGC-GGCGu -3'
miRNA:   3'- -UGUUC--CUGgGa-UCGCGUCUCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 110117 0.66 0.825784
Target:  5'- gACAGGGGCCgagAGcCGCcgcgcuuuugGGGGCgGGCGg -3'
miRNA:   3'- -UGUUCCUGGga-UC-GCG----------UCUCGaCCGC- -5'
24392 3' -58.1 NC_005264.1 + 98097 0.69 0.654533
Target:  5'- uCAGGGcgAUCCUuGCGCGGGGCacGGCGc -3'
miRNA:   3'- uGUUCC--UGGGAuCGCGUCUCGa-CCGC- -5'
24392 3' -58.1 NC_005264.1 + 95144 0.66 0.820707
Target:  5'- uACGGacGGCCCgGGCGCAGAGCUauucugccccugcaaGGUGc -3'
miRNA:   3'- -UGUUc-CUGGGaUCGCGUCUCGA---------------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.