miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24394 3' -65.9 NC_005264.1 + 124010 0.66 0.526181
Target:  5'- uGC-CCGCGCaucGUcgucguucucgUCCGCGCcGGGGUCg -3'
miRNA:   3'- -UGaGGCGCG---CG-----------GGGCGCGuCCCCAGg -5'
24394 3' -65.9 NC_005264.1 + 146665 0.66 0.526181
Target:  5'- --gCCGCGacCGaCCuCCGCGCAGGGcGgcauugCCg -3'
miRNA:   3'- ugaGGCGC--GC-GG-GGCGCGUCCC-Ca-----GG- -5'
24394 3' -65.9 NC_005264.1 + 31231 0.66 0.51707
Target:  5'- uCUCCgcGCGCGCCCaCGCGCGccGcUCCc -3'
miRNA:   3'- uGAGG--CGCGCGGG-GCGCGUccCcAGG- -5'
24394 3' -65.9 NC_005264.1 + 157583 0.66 0.508022
Target:  5'- gGCUUgGgCGCuuCCCCGUagcccaGCAGGGcGUCCu -3'
miRNA:   3'- -UGAGgC-GCGc-GGGGCG------CGUCCC-CAGG- -5'
24394 3' -65.9 NC_005264.1 + 77066 0.66 0.508022
Target:  5'- aGCUUaacaGC-CCCCGCGCaaugucuuGGGGGUCUc -3'
miRNA:   3'- -UGAGgcg-CGcGGGGCGCG--------UCCCCAGG- -5'
24394 3' -65.9 NC_005264.1 + 69667 0.66 0.507121
Target:  5'- uGCUCCGCccagucuggagcgGCGCCCCGaCGguGacuGGGa-- -3'
miRNA:   3'- -UGAGGCG-------------CGCGGGGC-GCguC---CCCagg -5'
24394 3' -65.9 NC_005264.1 + 3577 0.66 0.498147
Target:  5'- cCUCCGCguaacgccaggagGCGCgaagaauuaCCGcCGCGGGGGgCCg -3'
miRNA:   3'- uGAGGCG-------------CGCGg--------GGC-GCGUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 122604 0.66 0.498147
Target:  5'- cCUCCGCguaacgccaggagGCGCgaagaauuaCCGcCGCGGGGGgCCg -3'
miRNA:   3'- uGAGGCG-------------CGCGg--------GGC-GCGUCCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 122202 0.66 0.490133
Target:  5'- cCUCCGCGuCGCgaCgGCGCGGGGa--- -3'
miRNA:   3'- uGAGGCGC-GCGg-GgCGCGUCCCcagg -5'
24394 3' -65.9 NC_005264.1 + 3175 0.66 0.490133
Target:  5'- cCUCCGCGuCGCgaCgGCGCGGGGa--- -3'
miRNA:   3'- uGAGGCGC-GCGg-GgCGCGUCCCcagg -5'
24394 3' -65.9 NC_005264.1 + 130795 0.66 0.490133
Target:  5'- uCUCCGgGCGCCUgGCucGCAcuccGGGGcagCCc -3'
miRNA:   3'- uGAGGCgCGCGGGgCG--CGU----CCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 11769 0.66 0.490133
Target:  5'- uCUCCGgGCGCCUgGCucGCAcuccGGGGcagCCc -3'
miRNA:   3'- uGAGGCgCGCGGGgCG--CGU----CCCCa--GG- -5'
24394 3' -65.9 NC_005264.1 + 34272 0.66 0.481299
Target:  5'- -aUCCGCgugcuGCGCUCCGcCGCGGaaauauacguGGGUCa -3'
miRNA:   3'- ugAGGCG-----CGCGGGGC-GCGUC----------CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 117310 0.66 0.481299
Target:  5'- uCUCCGCGUGCgacugagaagCgUGCGCGGGucGUCCc -3'
miRNA:   3'- uGAGGCGCGCG----------GgGCGCGUCCc-CAGG- -5'
24394 3' -65.9 NC_005264.1 + 97987 0.66 0.481299
Target:  5'- --aCUGCGa--CCCGCGCAccGGGGaUCCa -3'
miRNA:   3'- ugaGGCGCgcgGGGCGCGU--CCCC-AGG- -5'
24394 3' -65.9 NC_005264.1 + 40640 0.66 0.481299
Target:  5'- --cCCGCGcCGUCgCGaCGCGGaGGGUCg -3'
miRNA:   3'- ugaGGCGC-GCGGgGC-GCGUC-CCCAGg -5'
24394 3' -65.9 NC_005264.1 + 981 0.66 0.478664
Target:  5'- --aUCGCGCuaaaauaagcucuuGCCCCGCGCccguguggugGGGGGgcaggggCCg -3'
miRNA:   3'- ugaGGCGCG--------------CGGGGCGCG----------UCCCCa------GG- -5'
24394 3' -65.9 NC_005264.1 + 161924 0.66 0.470801
Target:  5'- uCUCCGaccuuccccccaGCGgCCCGCGaCAcGGGG-CCg -3'
miRNA:   3'- uGAGGCg-----------CGCgGGGCGC-GU-CCCCaGG- -5'
24394 3' -65.9 NC_005264.1 + 68441 0.67 0.455277
Target:  5'- -gUCCGCGCcgcgGUCUgCGCGCGGaGGGccUCCa -3'
miRNA:   3'- ugAGGCGCG----CGGG-GCGCGUC-CCC--AGG- -5'
24394 3' -65.9 NC_005264.1 + 121525 0.67 0.455277
Target:  5'- -gUCgGCGgGCCUCGCGCgacuucagcgcgGGGGGcgacuUCCc -3'
miRNA:   3'- ugAGgCGCgCGGGGCGCG------------UCCCC-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.