Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24394 | 5' | -54 | NC_005264.1 | + | 3403 | 0.66 | 0.974649 |
Target: 5'- gCGGGGUCGgugCGcgGgGGAGgg-ACGu -3' miRNA: 3'- aGCCUCGGCa--GCuaCgCCUCauaUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 122430 | 0.66 | 0.974649 |
Target: 5'- gCGGGGUCGgugCGcgGgGGAGgg-ACGu -3' miRNA: 3'- aGCCUCGGCa--GCuaCgCCUCauaUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 59807 | 0.66 | 0.962698 |
Target: 5'- gCGGAGCCGUacguaGAcGUGaGGGUcgcGUACGc -3' miRNA: 3'- aGCCUCGGCAg----CUaCGC-CUCA---UAUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 136649 | 0.66 | 0.962698 |
Target: 5'- gCGGAGCC-UCGAcgcgcGUGGAGUAa--- -3' miRNA: 3'- aGCCUCGGcAGCUa----CGCCUCAUaugc -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 74109 | 0.66 | 0.962698 |
Target: 5'- gCGGucgacGCUGUCGcgGCuGGGGUccucAUGCGg -3' miRNA: 3'- aGCCu----CGGCAGCuaCG-CCUCA----UAUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 126101 | 0.67 | 0.959184 |
Target: 5'- cCGGcGCCGUCGcgcUGCGGGGa----- -3' miRNA: 3'- aGCCuCGGCAGCu--ACGCCUCauaugc -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 7074 | 0.67 | 0.959184 |
Target: 5'- cCGGcGCCGUCGcgcUGCGGGGa----- -3' miRNA: 3'- aGCCuCGGCAGCu--ACGCCUCauaugc -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 98226 | 0.67 | 0.955448 |
Target: 5'- gUCGG-GCCG-CGcUGCGGAGagguUAUGg -3' miRNA: 3'- -AGCCuCGGCaGCuACGCCUCau--AUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 17277 | 0.67 | 0.942874 |
Target: 5'- aCGGAGgCGaCGggGCGGAGg--GCu -3' miRNA: 3'- aGCCUCgGCaGCuaCGCCUCauaUGc -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 17360 | 0.67 | 0.942874 |
Target: 5'- gCGGcAGCUGgcggCGgcGCGGucuGUGUACGu -3' miRNA: 3'- aGCC-UCGGCa---GCuaCGCCu--CAUAUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 29230 | 0.67 | 0.938217 |
Target: 5'- -gGGAGCCagcgGUCGAggagcacaGCGGAGacUGCGg -3' miRNA: 3'- agCCUCGG----CAGCUa-------CGCCUCauAUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 149430 | 0.68 | 0.933324 |
Target: 5'- gCGGucGCgCGcCGGUGCGGAGagcUGCGg -3' miRNA: 3'- aGCCu-CG-GCaGCUACGCCUCau-AUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 30403 | 0.68 | 0.933324 |
Target: 5'- gCGGucGCgCGcCGGUGCGGAGagcUGCGg -3' miRNA: 3'- aGCCu-CG-GCaGCUACGCCUCau-AUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 121911 | 0.68 | 0.922824 |
Target: 5'- cCGGGGCgCGgCGcgGCGGGGaggGCGa -3' miRNA: 3'- aGCCUCG-GCaGCuaCGCCUCauaUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 2885 | 0.68 | 0.922824 |
Target: 5'- cCGGGGCgCGgCGcgGCGGGGaggGCGa -3' miRNA: 3'- aGCCUCG-GCaGCuaCGCCUCauaUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 96644 | 0.68 | 0.917217 |
Target: 5'- gCGGAGgcgcaccgcCCGcCGAUGCGGGcgGUGCGc -3' miRNA: 3'- aGCCUC---------GGCaGCUACGCCUcaUAUGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 31525 | 0.68 | 0.911373 |
Target: 5'- cUCGGgcggggagGGCCGUUGggGUGGGGgcggACGg -3' miRNA: 3'- -AGCC--------UCGGCAGCuaCGCCUCaua-UGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 162805 | 0.68 | 0.911373 |
Target: 5'- aCGGAgacucGCCGUgGGUGCGGGGc--GCa -3' miRNA: 3'- aGCCU-----CGGCAgCUACGCCUCauaUGc -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 150552 | 0.68 | 0.911373 |
Target: 5'- cUCGGgcggggagGGCCGUUGggGUGGGGgcggACGg -3' miRNA: 3'- -AGCC--------UCGGCAGCuaCGCCUCaua-UGC- -5' |
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24394 | 5' | -54 | NC_005264.1 | + | 43779 | 0.68 | 0.911373 |
Target: 5'- aCGGAgacucGCCGUgGGUGCGGGGc--GCa -3' miRNA: 3'- aGCCU-----CGGCAgCUACGCCUCauaUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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