miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 5' -55.1 NC_005264.1 + 110676 1.12 0.002211
Target:  5'- gGAGCGCCGAGAGCUACCUGAAACGCCa -3'
miRNA:   3'- -CUCGCGGCUCUCGAUGGACUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 64493 0.8 0.27366
Target:  5'- -cGCGCCGAGAGagucGCCUGGAccGCGCUg -3'
miRNA:   3'- cuCGCGGCUCUCga--UGGACUU--UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 40790 0.78 0.337109
Target:  5'- cGGCGCCGAGAGCggagccgcuUGCCgcgGGGuCGCCg -3'
miRNA:   3'- cUCGCGGCUCUCG---------AUGGa--CUUuGCGG- -5'
24404 5' -55.1 NC_005264.1 + 90901 0.76 0.455531
Target:  5'- cGGCGuuGGGGGCacgaucuccUGCCUGcaGAGCGCCa -3'
miRNA:   3'- cUCGCggCUCUCG---------AUGGAC--UUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 136358 0.75 0.493296
Target:  5'- cGGGCGCUGGGcGCUGCCggcgcGAAuaGCGCUg -3'
miRNA:   3'- -CUCGCGGCUCuCGAUGGa----CUU--UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 104162 0.75 0.51271
Target:  5'- aGAG-GCCGGGuGC-GCCUGcAGCGCCg -3'
miRNA:   3'- -CUCgCGGCUCuCGaUGGACuUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 32270 0.74 0.542394
Target:  5'- aGGGaGCCGAGAGCgagACCUGcGcguagcacacGCGCCg -3'
miRNA:   3'- -CUCgCGGCUCUCGa--UGGACuU----------UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 100737 0.74 0.562497
Target:  5'- aGGGCGCUGGucGAGCUcGCC-GAGGCGUCa -3'
miRNA:   3'- -CUCGCGGCU--CUCGA-UGGaCUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 122405 0.74 0.572625
Target:  5'- gGGGCGgCGAGGGCUucuCC-GGAACGCg -3'
miRNA:   3'- -CUCGCgGCUCUCGAu--GGaCUUUGCGg -5'
24404 5' -55.1 NC_005264.1 + 3378 0.74 0.572625
Target:  5'- gGGGCGgCGAGGGCUucuCC-GGAACGCg -3'
miRNA:   3'- -CUCGCgGCUCUCGAu--GGaCUUUGCGg -5'
24404 5' -55.1 NC_005264.1 + 68256 0.73 0.593002
Target:  5'- -cGCGCCGcGGGCgGCCUGcuGCuGCCg -3'
miRNA:   3'- cuCGCGGCuCUCGaUGGACuuUG-CGG- -5'
24404 5' -55.1 NC_005264.1 + 133225 0.73 0.603237
Target:  5'- -cGCGCCGuAGAGCUuucgaaGCC--AAGCGCCg -3'
miRNA:   3'- cuCGCGGC-UCUCGA------UGGacUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 120147 0.73 0.613494
Target:  5'- gGAGCGCCGGccggcgaugaccGAGCagACCUGGAACacgaagcgaggGCCu -3'
miRNA:   3'- -CUCGCGGCU------------CUCGa-UGGACUUUG-----------CGG- -5'
24404 5' -55.1 NC_005264.1 + 59716 0.73 0.623764
Target:  5'- -cGCGCCGGcGGCUACC----GCGCCg -3'
miRNA:   3'- cuCGCGGCUcUCGAUGGacuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 17287 0.72 0.654583
Target:  5'- cGGgGCgGAGGGCUGCCcaucuaacUGAAugGUCg -3'
miRNA:   3'- cUCgCGgCUCUCGAUGG--------ACUUugCGG- -5'
24404 5' -55.1 NC_005264.1 + 103810 0.72 0.654583
Target:  5'- -uGCGCgGAGAcCgACCUGAcGCGCCu -3'
miRNA:   3'- cuCGCGgCUCUcGaUGGACUuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 146316 0.72 0.662783
Target:  5'- aAGCGCUaAGAGCUAuCCUGAcucucggcgugcGCGCCg -3'
miRNA:   3'- cUCGCGGcUCUCGAU-GGACUu-----------UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 26381 0.72 0.664831
Target:  5'- cGGCGCCGucucuGAGCgcgGCCUc-AGCGCCc -3'
miRNA:   3'- cUCGCGGCu----CUCGa--UGGAcuUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 19425 0.72 0.675053
Target:  5'- aGGCGCCGGGuGUgGCCgcGggGCGCg -3'
miRNA:   3'- cUCGCGGCUCuCGaUGGa-CuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 6781 0.71 0.692343
Target:  5'- cAGCGCCGGcauGGCUACCgaaucuagcagccaUGAGGCGUCc -3'
miRNA:   3'- cUCGCGGCUc--UCGAUGG--------------ACUUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.