miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 5' -55.1 NC_005264.1 + 154565 0.7 0.773815
Target:  5'- cGGGCGCCuuGuuGGCguuCCUGAAccaacACGCCa -3'
miRNA:   3'- -CUCGCGG--CucUCGau-GGACUU-----UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 6781 0.71 0.692343
Target:  5'- cAGCGCCGGcauGGCUACCgaaucuagcagccaUGAGGCGUCc -3'
miRNA:   3'- cUCGCGGCUc--UCGAUGG--------------ACUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 5596 0.71 0.705468
Target:  5'- -cGCGCCGAGGGCcGCCacGAAgacccACGCg -3'
miRNA:   3'- cuCGCGGCUCUCGaUGGa-CUU-----UGCGg -5'
24404 5' -55.1 NC_005264.1 + 33850 0.71 0.725448
Target:  5'- -cGCGCCGcggcAGAGCUgaagaACgUGGAGCGUCc -3'
miRNA:   3'- cuCGCGGC----UCUCGA-----UGgACUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 116242 0.7 0.741202
Target:  5'- cGGUGCCGGGAGCUccGCCgUGAcauccguuacccCGCCg -3'
miRNA:   3'- cUCGCGGCUCUCGA--UGG-ACUuu----------GCGG- -5'
24404 5' -55.1 NC_005264.1 + 97732 0.7 0.745104
Target:  5'- aGGCGCCaAGAGCUGuCCgacauCGCCa -3'
miRNA:   3'- cUCGCGGcUCUCGAU-GGacuuuGCGG- -5'
24404 5' -55.1 NC_005264.1 + 97430 0.7 0.772876
Target:  5'- uGAGCGCUGcGGGCgccgccgcggAUCUGAuagacguAGCGCCg -3'
miRNA:   3'- -CUCGCGGCuCUCGa---------UGGACU-------UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 21512 0.7 0.773815
Target:  5'- aGGGUGUCGAGAGUaUACgCUGGGACaGCa -3'
miRNA:   3'- -CUCGCGGCUCUCG-AUG-GACUUUG-CGg -5'
24404 5' -55.1 NC_005264.1 + 25013 0.7 0.773815
Target:  5'- aGGCGCUGcauGCcucuCCUGAGGCGCCc -3'
miRNA:   3'- cUCGCGGCucuCGau--GGACUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 19425 0.72 0.675053
Target:  5'- aGGCGCCGGGuGUgGCCgcGggGCGCg -3'
miRNA:   3'- cUCGCGGCUCuCGaUGGa-CuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 103810 0.72 0.654583
Target:  5'- -uGCGCgGAGAcCgACCUGAcGCGCCu -3'
miRNA:   3'- cuCGCGgCUCUcGaUGGACUuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 17287 0.72 0.654583
Target:  5'- cGGgGCgGAGGGCUGCCcaucuaacUGAAugGUCg -3'
miRNA:   3'- cUCgCGgCUCUCGAUGG--------ACUUugCGG- -5'
24404 5' -55.1 NC_005264.1 + 40790 0.78 0.337109
Target:  5'- cGGCGCCGAGAGCggagccgcuUGCCgcgGGGuCGCCg -3'
miRNA:   3'- cUCGCGGCUCUCG---------AUGGa--CUUuGCGG- -5'
24404 5' -55.1 NC_005264.1 + 136358 0.75 0.493296
Target:  5'- cGGGCGCUGGGcGCUGCCggcgcGAAuaGCGCUg -3'
miRNA:   3'- -CUCGCGGCUCuCGAUGGa----CUU--UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 104162 0.75 0.51271
Target:  5'- aGAG-GCCGGGuGC-GCCUGcAGCGCCg -3'
miRNA:   3'- -CUCgCGGCUCuCGaUGGACuUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 32270 0.74 0.542394
Target:  5'- aGGGaGCCGAGAGCgagACCUGcGcguagcacacGCGCCg -3'
miRNA:   3'- -CUCgCGGCUCUCGa--UGGACuU----------UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 122405 0.74 0.572625
Target:  5'- gGGGCGgCGAGGGCUucuCC-GGAACGCg -3'
miRNA:   3'- -CUCGCgGCUCUCGAu--GGaCUUUGCGg -5'
24404 5' -55.1 NC_005264.1 + 68256 0.73 0.593002
Target:  5'- -cGCGCCGcGGGCgGCCUGcuGCuGCCg -3'
miRNA:   3'- cuCGCGGCuCUCGaUGGACuuUG-CGG- -5'
24404 5' -55.1 NC_005264.1 + 133225 0.73 0.603237
Target:  5'- -cGCGCCGuAGAGCUuucgaaGCC--AAGCGCCg -3'
miRNA:   3'- cuCGCGGC-UCUCGA------UGGacUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 59716 0.73 0.623764
Target:  5'- -cGCGCCGGcGGCUACC----GCGCCg -3'
miRNA:   3'- cuCGCGGCUcUCGAUGGacuuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.