miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 5' -55.1 NC_005264.1 + 3378 0.74 0.572625
Target:  5'- gGGGCGgCGAGGGCUucuCC-GGAACGCg -3'
miRNA:   3'- -CUCGCgGCUCUCGAu--GGaCUUUGCGg -5'
24404 5' -55.1 NC_005264.1 + 3860 0.66 0.935968
Target:  5'- -uGCGCCGGGgauugGGCUGCCcc--ACGUCu -3'
miRNA:   3'- cuCGCGGCUC-----UCGAUGGacuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 5010 0.66 0.925653
Target:  5'- -cGCGCCG-GGGUcGCCgcgGAGuACGUCa -3'
miRNA:   3'- cuCGCGGCuCUCGaUGGa--CUU-UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 5052 0.67 0.914374
Target:  5'- uGGGCGCCGc---CUAgCUGGgaaGACGCCg -3'
miRNA:   3'- -CUCGCGGCucucGAUgGACU---UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 5245 0.66 0.93093
Target:  5'- aGGaCGCCcugcuGGGCUACgggGAAGCGCCc -3'
miRNA:   3'- cUC-GCGGcu---CUCGAUGga-CUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 5257 0.69 0.801379
Target:  5'- aGAGCGCCGGGAGgCgagucgcgGCCggacggcGggGCGgCg -3'
miRNA:   3'- -CUCGCGGCUCUC-Ga-------UGGa------CuuUGCgG- -5'
24404 5' -55.1 NC_005264.1 + 5596 0.71 0.705468
Target:  5'- -cGCGCCGAGGGCcGCCacGAAgacccACGCg -3'
miRNA:   3'- cuCGCGGCUCUCGaUGGa-CUU-----UGCGg -5'
24404 5' -55.1 NC_005264.1 + 6287 0.66 0.919568
Target:  5'- uAGCGCCGAGcucucccAGCUGCaCUu--GCGCg -3'
miRNA:   3'- cUCGCGGCUC-------UCGAUG-GAcuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 6677 0.66 0.940764
Target:  5'- uGGCGCC-AGcAGCgagGCC-GAGACgGCCg -3'
miRNA:   3'- cUCGCGGcUC-UCGa--UGGaCUUUG-CGG- -5'
24404 5' -55.1 NC_005264.1 + 6781 0.71 0.692343
Target:  5'- cAGCGCCGGcauGGCUACCgaaucuagcagccaUGAGGCGUCc -3'
miRNA:   3'- cUCGCGGCUc--UCGAUGG--------------ACUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 7137 0.68 0.867501
Target:  5'- -cGCGaaGaAGGGCaGCCUGAGgcuACGCCc -3'
miRNA:   3'- cuCGCggC-UCUCGaUGGACUU---UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 7943 0.68 0.859914
Target:  5'- cGAGacgaGCCGgaGGGGCUACUgGAAGacaGCCa -3'
miRNA:   3'- -CUCg---CGGC--UCUCGAUGGaCUUUg--CGG- -5'
24404 5' -55.1 NC_005264.1 + 8300 0.69 0.801379
Target:  5'- uGGGCGaCGGGGGC-ACCU---GCGCCg -3'
miRNA:   3'- -CUCGCgGCUCUCGaUGGAcuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 9943 0.69 0.81027
Target:  5'- -cGCGCUGAGAGCUAUaCUacAACGUUg -3'
miRNA:   3'- cuCGCGGCUCUCGAUG-GAcuUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 9949 0.67 0.914374
Target:  5'- aGAGaCGCCggcGAGGGaCUGCCgGAcccgugggcGAUGCCg -3'
miRNA:   3'- -CUC-GCGG---CUCUC-GAUGGaCU---------UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 12142 0.67 0.914374
Target:  5'- --cCGCCGAGAGCccUGCCUc--GCGCa -3'
miRNA:   3'- cucGCGGCUCUCG--AUGGAcuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 17287 0.72 0.654583
Target:  5'- cGGgGCgGAGGGCUGCCcaucuaacUGAAugGUCg -3'
miRNA:   3'- cUCgCGgCUCUCGAUGG--------ACUUugCGG- -5'
24404 5' -55.1 NC_005264.1 + 17762 0.67 0.908375
Target:  5'- -cGCGgCaagGAGAGCUGCCcGGcccggcuucuagAGCGCCa -3'
miRNA:   3'- cuCGCgG---CUCUCGAUGGaCU------------UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 18529 0.66 0.929894
Target:  5'- gGGGCGCCGucuccc-CCUGAGggcGCGCCg -3'
miRNA:   3'- -CUCGCGGCucucgauGGACUU---UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 19425 0.72 0.675053
Target:  5'- aGGCGCCGGGuGUgGCCgcGggGCGCg -3'
miRNA:   3'- cUCGCGGCUCuCGaUGGa-CuuUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.