miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 26049 0.67 0.947879
Target:  5'- -cACGCUaGAUaGGUGgUGGCCGUgugUGCCu -3'
miRNA:   3'- gcUGCGA-CUA-CUACgAUCGGCG---AUGG- -5'
24414 5' -53.1 NC_005264.1 + 128101 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 9074 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 142808 0.68 0.938698
Target:  5'- uGACGCUGcacgGGUGCgagcgcGCCGUgguagACCc -3'
miRNA:   3'- gCUGCGACua--CUACGau----CGGCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 9210 0.68 0.933742
Target:  5'- uGGCGUUGuacuuucUGCgaaacGCCGCUACCa -3'
miRNA:   3'- gCUGCGACuacu---ACGau---CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 130026 0.68 0.93065
Target:  5'- aCGGCGCcgcaggcuuccgcgaUGAUGGuUGCggccagaccGUCGCUGCCg -3'
miRNA:   3'- -GCUGCG---------------ACUACU-ACGau-------CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 39632 0.68 0.923092
Target:  5'- aCGGCGCUG-UGGUuuU-GCCGCgcgGCCu -3'
miRNA:   3'- -GCUGCGACuACUAcgAuCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 146961 0.69 0.911457
Target:  5'- uGGCGCUGAgGccGCaGGCUGCggaGCCu -3'
miRNA:   3'- gCUGCGACUaCuaCGaUCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 27663 0.69 0.911457
Target:  5'- gCGGCGCUcggaccgaGGUacGcgGCUGGCCuCUGCCu -3'
miRNA:   3'- -GCUGCGA--------CUA--CuaCGAUCGGcGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 142495 0.69 0.905274
Target:  5'- aCGACGCUGGcacGGcgcguuuccUGCUuGCCGgUGCCc -3'
miRNA:   3'- -GCUGCGACUa--CU---------ACGAuCGGCgAUGG- -5'
24414 5' -53.1 NC_005264.1 + 81398 0.69 0.898849
Target:  5'- aGAUGCaUGcgGGUGCgcGCCGCUugguGCUc -3'
miRNA:   3'- gCUGCG-ACuaCUACGauCGGCGA----UGG- -5'
24414 5' -53.1 NC_005264.1 + 98012 0.69 0.892185
Target:  5'- aGuACGC--AUGGUGCUGGCCGaCUucaGCCu -3'
miRNA:   3'- gC-UGCGacUACUACGAUCGGC-GA---UGG- -5'
24414 5' -53.1 NC_005264.1 + 40789 0.69 0.892185
Target:  5'- gCGGCGCcGA-GA-GCggAGCCGCUuGCCg -3'
miRNA:   3'- -GCUGCGaCUaCUaCGa-UCGGCGA-UGG- -5'
24414 5' -53.1 NC_005264.1 + 100381 0.69 0.892185
Target:  5'- -aAUGCUGcgGAUGCc-GCUGCUGCg -3'
miRNA:   3'- gcUGCGACuaCUACGauCGGCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 33641 0.7 0.878156
Target:  5'- gCGACgGUUGGUcgacGGUGCUAGCCGac-CCa -3'
miRNA:   3'- -GCUG-CGACUA----CUACGAUCGGCgauGG- -5'
24414 5' -53.1 NC_005264.1 + 103187 0.7 0.878156
Target:  5'- aGACguGCUGAUuuUGCUcGCUGCUugCg -3'
miRNA:   3'- gCUG--CGACUAcuACGAuCGGCGAugG- -5'
24414 5' -53.1 NC_005264.1 + 54847 0.7 0.878156
Target:  5'- -cACGCUGucucacugcGUGAUGCUcaaAGCCGCU-CUa -3'
miRNA:   3'- gcUGCGAC---------UACUACGA---UCGGCGAuGG- -5'
24414 5' -53.1 NC_005264.1 + 80632 0.7 0.87377
Target:  5'- gCGAUGCUGgcGccGCUaccgucuaauacgauGGCCGCcGCCg -3'
miRNA:   3'- -GCUGCGACuaCuaCGA---------------UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 36655 0.7 0.863225
Target:  5'- cCGuGCGCgGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GC-UGCGaCUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 102907 0.7 0.863225
Target:  5'- gCGACGCUGGUGGaacucUUGGCCgaGCUGCg -3'
miRNA:   3'- -GCUGCGACUACUac---GAUCGG--CGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.