miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 81398 0.69 0.898849
Target:  5'- aGAUGCaUGcgGGUGCgcGCCGCUugguGCUc -3'
miRNA:   3'- gCUGCG-ACuaCUACGauCGGCGA----UGG- -5'
24414 5' -53.1 NC_005264.1 + 142495 0.69 0.905274
Target:  5'- aCGACGCUGGcacGGcgcguuuccUGCUuGCCGgUGCCc -3'
miRNA:   3'- -GCUGCGACUa--CU---------ACGAuCGGCgAUGG- -5'
24414 5' -53.1 NC_005264.1 + 27663 0.69 0.911457
Target:  5'- gCGGCGCUcggaccgaGGUacGcgGCUGGCCuCUGCCu -3'
miRNA:   3'- -GCUGCGA--------CUA--CuaCGAUCGGcGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 146961 0.69 0.911457
Target:  5'- uGGCGCUGAgGccGCaGGCUGCggaGCCu -3'
miRNA:   3'- gCUGCGACUaCuaCGaUCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 39632 0.68 0.923092
Target:  5'- aCGGCGCUG-UGGUuuU-GCCGCgcgGCCu -3'
miRNA:   3'- -GCUGCGACuACUAcgAuCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 130026 0.68 0.93065
Target:  5'- aCGGCGCcgcaggcuuccgcgaUGAUGGuUGCggccagaccGUCGCUGCCg -3'
miRNA:   3'- -GCUGCG---------------ACUACU-ACGau-------CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 9210 0.68 0.933742
Target:  5'- uGGCGUUGuacuuucUGCgaaacGCCGCUACCa -3'
miRNA:   3'- gCUGCGACuacu---ACGau---CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 142808 0.68 0.938698
Target:  5'- uGACGCUGcacgGGUGCgagcgcGCCGUgguagACCc -3'
miRNA:   3'- gCUGCGACua--CUACGau----CGGCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 128101 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 9074 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 26049 0.67 0.947879
Target:  5'- -cACGCUaGAUaGGUGgUGGCCGUgugUGCCu -3'
miRNA:   3'- gcUGCGA-CUA-CUACgAUCGGCG---AUGG- -5'
24414 5' -53.1 NC_005264.1 + 48735 0.67 0.9561
Target:  5'- gCGAUGCUGAUGAaGC-GGCuCGUaACUc -3'
miRNA:   3'- -GCUGCGACUACUaCGaUCG-GCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 106693 0.67 0.9561
Target:  5'- aGACGCgcagcaaGAUGuacacaucGCUcGCCGUUACCu -3'
miRNA:   3'- gCUGCGa------CUACua------CGAuCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 65731 0.67 0.9561
Target:  5'- aGAUGCUGGgacGAUGUgugguccGCCGUcgGCCg -3'
miRNA:   3'- gCUGCGACUa--CUACGau-----CGGCGa-UGG- -5'
24414 5' -53.1 NC_005264.1 + 116553 0.67 0.95986
Target:  5'- aGACGCcgGAUGA-GCgAGCUGCgGCg -3'
miRNA:   3'- gCUGCGa-CUACUaCGaUCGGCGaUGg -5'
24414 5' -53.1 NC_005264.1 + 132371 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 13344 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 92594 0.67 0.966701
Target:  5'- cCGACGCgggcagguuUGAUGc-GCUGGCC-CUGCa -3'
miRNA:   3'- -GCUGCG---------ACUACuaCGAUCGGcGAUGg -5'
24414 5' -53.1 NC_005264.1 + 78739 0.67 0.966701
Target:  5'- uCGGCGgUGAUuugccaucaGAUGCgc-CCGCUGCUc -3'
miRNA:   3'- -GCUGCgACUA---------CUACGaucGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 93778 0.67 0.966701
Target:  5'- gCGACGaC-GAUGAccUGCccggcGGCCGCgGCCa -3'
miRNA:   3'- -GCUGC-GaCUACU--ACGa----UCGGCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.