miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 78739 0.67 0.966701
Target:  5'- uCGGCGgUGAUuugccaucaGAUGCgc-CCGCUGCUc -3'
miRNA:   3'- -GCUGCgACUA---------CUACGaucGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 80632 0.7 0.87377
Target:  5'- gCGAUGCUGgcGccGCUaccgucuaauacgauGGCCGCcGCCg -3'
miRNA:   3'- -GCUGCGACuaCuaCGA---------------UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 81398 0.69 0.898849
Target:  5'- aGAUGCaUGcgGGUGCgcGCCGCUugguGCUc -3'
miRNA:   3'- gCUGCG-ACuaCUACGauCGGCGA----UGG- -5'
24414 5' -53.1 NC_005264.1 + 84950 0.66 0.980123
Target:  5'- uGGCGCcg--GGUGCUcgcuugcggccaGGCUGCUGCg -3'
miRNA:   3'- gCUGCGacuaCUACGA------------UCGGCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 85624 0.66 0.975351
Target:  5'- cCGAUGCcGuUGcUGC-AGCCGCUaaugGCCg -3'
miRNA:   3'- -GCUGCGaCuACuACGaUCGGCGA----UGG- -5'
24414 5' -53.1 NC_005264.1 + 90651 0.66 0.977832
Target:  5'- gGGCGCgcgGA-GAccgcauUGCUGGCgGCUAUg -3'
miRNA:   3'- gCUGCGa--CUaCU------ACGAUCGgCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 92594 0.67 0.966701
Target:  5'- cCGACGCgggcagguuUGAUGc-GCUGGCC-CUGCa -3'
miRNA:   3'- -GCUGCG---------ACUACuaCGAUCGGcGAUGg -5'
24414 5' -53.1 NC_005264.1 + 93778 0.67 0.966701
Target:  5'- gCGACGaC-GAUGAccUGCccggcGGCCGCgGCCa -3'
miRNA:   3'- -GCUGC-GaCUACU--ACGa----UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 98012 0.69 0.892185
Target:  5'- aGuACGC--AUGGUGCUGGCCGaCUucaGCCu -3'
miRNA:   3'- gC-UGCGacUACUACGAUCGGC-GA---UGG- -5'
24414 5' -53.1 NC_005264.1 + 100381 0.69 0.892185
Target:  5'- -aAUGCUGcgGAUGCc-GCUGCUGCg -3'
miRNA:   3'- gcUGCGACuaCUACGauCGGCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 102907 0.7 0.863225
Target:  5'- gCGACGCUGGUGGaacucUUGGCCgaGCUGCg -3'
miRNA:   3'- -GCUGCGACUACUac---GAUCGG--CGAUGg -5'
24414 5' -53.1 NC_005264.1 + 103187 0.7 0.878156
Target:  5'- aGACguGCUGAUuuUGCUcGCUGCUugCg -3'
miRNA:   3'- gCUG--CGACUAcuACGAuCGGCGAugG- -5'
24414 5' -53.1 NC_005264.1 + 103584 1.13 0.003086
Target:  5'- gCGACGCUGAUGAUGCUAGCCGCUACCg -3'
miRNA:   3'- -GCUGCGACUACUACGAUCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 105528 0.66 0.980123
Target:  5'- uCGAUGCgGAUgcGAUcGCUGaguGCCGCUAgCu -3'
miRNA:   3'- -GCUGCGaCUA--CUA-CGAU---CGGCGAUgG- -5'
24414 5' -53.1 NC_005264.1 + 106693 0.67 0.9561
Target:  5'- aGACGCgcagcaaGAUGuacacaucGCUcGCCGUUACCu -3'
miRNA:   3'- gCUGCGa------CUACua------CGAuCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 112566 0.66 0.977832
Target:  5'- gGGCGUUGGUGAU-CU--CCGCgGCCa -3'
miRNA:   3'- gCUGCGACUACUAcGAucGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 116426 0.66 0.980123
Target:  5'- aGGuCGCUGggGgcGuCUGGCCGCggggGCg -3'
miRNA:   3'- gCU-GCGACuaCuaC-GAUCGGCGa---UGg -5'
24414 5' -53.1 NC_005264.1 + 116553 0.67 0.95986
Target:  5'- aGACGCcgGAUGA-GCgAGCUGCgGCg -3'
miRNA:   3'- gCUGCGa-CUACUaCGaUCGGCGaUGg -5'
24414 5' -53.1 NC_005264.1 + 125912 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 128101 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.