miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 6886 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 9074 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 9210 0.68 0.933742
Target:  5'- uGGCGUUGuacuuucUGCgaaacGCCGCUACCa -3'
miRNA:   3'- gCUGCGACuacu---ACGau---CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 13344 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 16300 0.71 0.839234
Target:  5'- aGAgGCUGggGAUGUgcGCCGC-ACUc -3'
miRNA:   3'- gCUgCGACuaCUACGauCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 25613 0.66 0.969793
Target:  5'- cCGGCGUUGcgGAacacggcgGCgguggGGCCGCgcuCCg -3'
miRNA:   3'- -GCUGCGACuaCUa-------CGa----UCGGCGau-GG- -5'
24414 5' -53.1 NC_005264.1 + 26049 0.67 0.947879
Target:  5'- -cACGCUaGAUaGGUGgUGGCCGUgugUGCCu -3'
miRNA:   3'- gcUGCGA-CUA-CUACgAUCGGCG---AUGG- -5'
24414 5' -53.1 NC_005264.1 + 27663 0.69 0.911457
Target:  5'- gCGGCGCUcggaccgaGGUacGcgGCUGGCCuCUGCCu -3'
miRNA:   3'- -GCUGCGA--------CUA--CuaCGAUCGGcGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 31895 0.66 0.977832
Target:  5'- uCGAUGCUGAcGuUGCgaaGGUaaGCUACCg -3'
miRNA:   3'- -GCUGCGACUaCuACGa--UCGg-CGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 33641 0.7 0.878156
Target:  5'- gCGACgGUUGGUcgacGGUGCUAGCCGac-CCa -3'
miRNA:   3'- -GCUG-CGACUA----CUACGAUCGGCgauGG- -5'
24414 5' -53.1 NC_005264.1 + 35010 0.72 0.786241
Target:  5'- gCGGCGCUcGAaGAggagcGCUGGCCGUccugGCCg -3'
miRNA:   3'- -GCUGCGA-CUaCUa----CGAUCGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 36655 0.7 0.863225
Target:  5'- cCGuGCGCgGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GC-UGCGaCUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 39632 0.68 0.923092
Target:  5'- aCGGCGCUG-UGGUuuU-GCCGCgcgGCCu -3'
miRNA:   3'- -GCUGCGACuACUAcgAuCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 40789 0.69 0.892185
Target:  5'- gCGGCGCcGA-GA-GCggAGCCGCUuGCCg -3'
miRNA:   3'- -GCUGCGaCUaCUaCGa-UCGGCGA-UGG- -5'
24414 5' -53.1 NC_005264.1 + 48735 0.67 0.9561
Target:  5'- gCGAUGCUGAUGAaGC-GGCuCGUaACUc -3'
miRNA:   3'- -GCUGCGACUACUaCGaUCG-GCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 54847 0.7 0.878156
Target:  5'- -cACGCUGucucacugcGUGAUGCUcaaAGCCGCU-CUa -3'
miRNA:   3'- gcUGCGAC---------UACUACGA---UCGGCGAuGG- -5'
24414 5' -53.1 NC_005264.1 + 59121 0.73 0.738081
Target:  5'- cCGcCGCUGAUGccGCgccGCCGCU-CCa -3'
miRNA:   3'- -GCuGCGACUACuaCGau-CGGCGAuGG- -5'
24414 5' -53.1 NC_005264.1 + 65731 0.67 0.9561
Target:  5'- aGAUGCUGGgacGAUGUgugguccGCCGUcgGCCg -3'
miRNA:   3'- gCUGCGACUa--CUACGau-----CGGCGa-UGG- -5'
24414 5' -53.1 NC_005264.1 + 66372 0.71 0.822259
Target:  5'- aGACGUUGGUGGccgacucgcUGgaAGCCGCUAg- -3'
miRNA:   3'- gCUGCGACUACU---------ACgaUCGGCGAUgg -5'
24414 5' -53.1 NC_005264.1 + 66448 0.66 0.980123
Target:  5'- gGGCGCUuccGAUGGggagaugGCaccGCCGCgGCCa -3'
miRNA:   3'- gCUGCGA---CUACUa------CGau-CGGCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.