miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 155677 0.66 0.972674
Target:  5'- cCGACccguGCggGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GCUG----CGa-CUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 128101 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 26049 0.67 0.947879
Target:  5'- -cACGCUaGAUaGGUGgUGGCCGUgugUGCCu -3'
miRNA:   3'- gcUGCGA-CUA-CUACgAUCGGCG---AUGG- -5'
24414 5' -53.1 NC_005264.1 + 65731 0.67 0.9561
Target:  5'- aGAUGCUGGgacGAUGUgugguccGCCGUcgGCCg -3'
miRNA:   3'- gCUGCGACUa--CUACGau-----CGGCGa-UGG- -5'
24414 5' -53.1 NC_005264.1 + 132371 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 78739 0.67 0.966701
Target:  5'- uCGGCGgUGAUuugccaucaGAUGCgc-CCGCUGCUc -3'
miRNA:   3'- -GCUGCgACUA---------CUACGaucGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 92594 0.67 0.966701
Target:  5'- cCGACGCgggcagguuUGAUGc-GCUGGCC-CUGCa -3'
miRNA:   3'- -GCUGCG---------ACUACuaCGAUCGGcGAUGg -5'
24414 5' -53.1 NC_005264.1 + 93778 0.67 0.966701
Target:  5'- gCGACGaC-GAUGAccUGCccggcGGCCGCgGCCa -3'
miRNA:   3'- -GCUGC-GaCUACU--ACGa----UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 133163 0.66 0.972674
Target:  5'- aCGAgGCUGGacgcucccUGAUGCUAcGCaaCGCggcggACCg -3'
miRNA:   3'- -GCUgCGACU--------ACUACGAU-CG--GCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 142808 0.68 0.938698
Target:  5'- uGACGCUGcacgGGUGCgagcgcGCCGUgguagACCc -3'
miRNA:   3'- gCUGCGACua--CUACGau----CGGCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 9210 0.68 0.933742
Target:  5'- uGGCGUUGuacuuucUGCgaaacGCCGCUACCa -3'
miRNA:   3'- gCUGCGACuacu---ACGau---CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 39632 0.68 0.923092
Target:  5'- aCGGCGCUG-UGGUuuU-GCCGCgcgGCCu -3'
miRNA:   3'- -GCUGCGACuACUAcgAuCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 154037 0.72 0.786241
Target:  5'- gCGGCGCUcGAaGAggagcGCUGGCCGUccugGCCg -3'
miRNA:   3'- -GCUGCGA-CUaCUa----CGAUCGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 125912 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 102907 0.7 0.863225
Target:  5'- gCGACGCUGGUGGaacucUUGGCCgaGCUGCg -3'
miRNA:   3'- -GCUGCGACUACUac---GAUCGG--CGAUGg -5'
24414 5' -53.1 NC_005264.1 + 80632 0.7 0.87377
Target:  5'- gCGAUGCUGgcGccGCUaccgucuaauacgauGGCCGCcGCCg -3'
miRNA:   3'- -GCUGCGACuaCuaCGA---------------UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 33641 0.7 0.878156
Target:  5'- gCGACgGUUGGUcgacGGUGCUAGCCGac-CCa -3'
miRNA:   3'- -GCUG-CGACUA----CUACGAUCGGCgauGG- -5'
24414 5' -53.1 NC_005264.1 + 98012 0.69 0.892185
Target:  5'- aGuACGC--AUGGUGCUGGCCGaCUucaGCCu -3'
miRNA:   3'- gC-UGCGacUACUACGAUCGGC-GA---UGG- -5'
24414 5' -53.1 NC_005264.1 + 40789 0.69 0.892185
Target:  5'- gCGGCGCcGA-GA-GCggAGCCGCUuGCCg -3'
miRNA:   3'- -GCUGCGaCUaCUaCGa-UCGGCGA-UGG- -5'
24414 5' -53.1 NC_005264.1 + 100381 0.69 0.892185
Target:  5'- -aAUGCUGcgGAUGCc-GCUGCUGCg -3'
miRNA:   3'- gcUGCGACuaCUACGauCGGCGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.