miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 84950 0.66 0.980123
Target:  5'- uGGCGCcg--GGUGCUcgcuugcggccaGGCUGCUGCg -3'
miRNA:   3'- gCUGCGacuaCUACGA------------UCGGCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 36655 0.7 0.863225
Target:  5'- cCGuGCGCgGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GC-UGCGaCUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 6886 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 103584 1.13 0.003086
Target:  5'- gCGACGCUGAUGAUGCUAGCCGCUACCg -3'
miRNA:   3'- -GCUGCGACUACUACGAUCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 25613 0.66 0.969793
Target:  5'- cCGGCGUUGcgGAacacggcgGCgguggGGCCGCgcuCCg -3'
miRNA:   3'- -GCUGCGACuaCUa-------CGa----UCGGCGau-GG- -5'
24414 5' -53.1 NC_005264.1 + 13344 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 106693 0.67 0.9561
Target:  5'- aGACGCgcagcaaGAUGuacacaucGCUcGCCGUUACCu -3'
miRNA:   3'- gCUGCGa------CUACua------CGAuCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 48735 0.67 0.9561
Target:  5'- gCGAUGCUGAUGAaGC-GGCuCGUaACUc -3'
miRNA:   3'- -GCUGCGACUACUaCGaUCG-GCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 146961 0.69 0.911457
Target:  5'- uGGCGCUGAgGccGCaGGCUGCggaGCCu -3'
miRNA:   3'- gCUGCGACUaCuaCGaUCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 54847 0.7 0.878156
Target:  5'- -cACGCUGucucacugcGUGAUGCUcaaAGCCGCU-CUa -3'
miRNA:   3'- gcUGCGAC---------UACUACGA---UCGGCGAuGG- -5'
24414 5' -53.1 NC_005264.1 + 142495 0.69 0.905274
Target:  5'- aCGACGCUGGcacGGcgcguuuccUGCUuGCCGgUGCCc -3'
miRNA:   3'- -GCUGCGACUa--CU---------ACGAuCGGCgAUGG- -5'
24414 5' -53.1 NC_005264.1 + 130026 0.68 0.93065
Target:  5'- aCGGCGCcgcaggcuuccgcgaUGAUGGuUGCggccagaccGUCGCUGCCg -3'
miRNA:   3'- -GCUGCG---------------ACUACU-ACGau-------CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 112566 0.66 0.977832
Target:  5'- gGGCGUUGGUGAU-CU--CCGCgGCCa -3'
miRNA:   3'- gCUGCGACUACUAcGAucGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 81398 0.69 0.898849
Target:  5'- aGAUGCaUGcgGGUGCgcGCCGCUugguGCUc -3'
miRNA:   3'- gCUGCG-ACuaCUACGauCGGCGA----UGG- -5'
24414 5' -53.1 NC_005264.1 + 66448 0.66 0.980123
Target:  5'- gGGCGCUuccGAUGGggagaugGCaccGCCGCgGCCa -3'
miRNA:   3'- gCUGCGA---CUACUa------CGau-CGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 9074 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 103187 0.7 0.878156
Target:  5'- aGACguGCUGAUuuUGCUcGCUGCUugCg -3'
miRNA:   3'- gCUG--CGACUAcuACGAuCGGCGAugG- -5'
24414 5' -53.1 NC_005264.1 + 16300 0.71 0.839234
Target:  5'- aGAgGCUGggGAUGUgcGCCGC-ACUc -3'
miRNA:   3'- gCUgCGACuaCUACGauCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 90651 0.66 0.977832
Target:  5'- gGGCGCgcgGA-GAccgcauUGCUGGCgGCUAUg -3'
miRNA:   3'- gCUGCGa--CUaCU------ACGAUCGgCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 116553 0.67 0.95986
Target:  5'- aGACGCcgGAUGA-GCgAGCUGCgGCg -3'
miRNA:   3'- gCUGCGa-CUACUaCGaUCGGCGaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.