miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 103584 1.13 0.003086
Target:  5'- gCGACGCUGAUGAUGCUAGCCGCUACCg -3'
miRNA:   3'- -GCUGCGACUACUACGAUCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 59121 0.73 0.738081
Target:  5'- cCGcCGCUGAUGccGCgccGCCGCU-CCa -3'
miRNA:   3'- -GCuGCGACUACuaCGau-CGGCGAuGG- -5'
24414 5' -53.1 NC_005264.1 + 153276 0.72 0.786241
Target:  5'- gCGACGUUuuaccUGCUAGCCGCcACCg -3'
miRNA:   3'- -GCUGCGAcuacuACGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 35010 0.72 0.786241
Target:  5'- gCGGCGCUcGAaGAggagcGCUGGCCGUccugGCCg -3'
miRNA:   3'- -GCUGCGA-CUaCUa----CGAUCGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 154037 0.72 0.786241
Target:  5'- gCGGCGCUcGAaGAggagcGCUGGCCGUccugGCCg -3'
miRNA:   3'- -GCUGCGA-CUaCUa----CGAUCGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 130276 0.71 0.8135
Target:  5'- gCGACGUUGcgGcgGCUA-CCGCggcaGCCa -3'
miRNA:   3'- -GCUGCGACuaCuaCGAUcGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 66372 0.71 0.822259
Target:  5'- aGACGUUGGUGGccgacucgcUGgaAGCCGCUAg- -3'
miRNA:   3'- gCUGCGACUACU---------ACgaUCGGCGAUgg -5'
24414 5' -53.1 NC_005264.1 + 142765 0.71 0.830839
Target:  5'- aCGA-GCUGAcGGUGCUuGCuCGCUACg -3'
miRNA:   3'- -GCUgCGACUaCUACGAuCG-GCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 125912 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 16300 0.71 0.839234
Target:  5'- aGAgGCUGggGAUGUgcGCCGC-ACUc -3'
miRNA:   3'- gCUgCGACuaCUACGauCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 6886 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 102907 0.7 0.863225
Target:  5'- gCGACGCUGGUGGaacucUUGGCCgaGCUGCg -3'
miRNA:   3'- -GCUGCGACUACUac---GAUCGG--CGAUGg -5'
24414 5' -53.1 NC_005264.1 + 36655 0.7 0.863225
Target:  5'- cCGuGCGCgGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GC-UGCGaCUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 80632 0.7 0.87377
Target:  5'- gCGAUGCUGgcGccGCUaccgucuaauacgauGGCCGCcGCCg -3'
miRNA:   3'- -GCUGCGACuaCuaCGA---------------UCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 54847 0.7 0.878156
Target:  5'- -cACGCUGucucacugcGUGAUGCUcaaAGCCGCU-CUa -3'
miRNA:   3'- gcUGCGAC---------UACUACGA---UCGGCGAuGG- -5'
24414 5' -53.1 NC_005264.1 + 103187 0.7 0.878156
Target:  5'- aGACguGCUGAUuuUGCUcGCUGCUugCg -3'
miRNA:   3'- gCUG--CGACUAcuACGAuCGGCGAugG- -5'
24414 5' -53.1 NC_005264.1 + 33641 0.7 0.878156
Target:  5'- gCGACgGUUGGUcgacGGUGCUAGCCGac-CCa -3'
miRNA:   3'- -GCUG-CGACUA----CUACGAUCGGCgauGG- -5'
24414 5' -53.1 NC_005264.1 + 40789 0.69 0.892185
Target:  5'- gCGGCGCcGA-GA-GCggAGCCGCUuGCCg -3'
miRNA:   3'- -GCUGCGaCUaCUaCGa-UCGGCGA-UGG- -5'
24414 5' -53.1 NC_005264.1 + 98012 0.69 0.892185
Target:  5'- aGuACGC--AUGGUGCUGGCCGaCUucaGCCu -3'
miRNA:   3'- gC-UGCGacUACUACGAUCGGC-GA---UGG- -5'
24414 5' -53.1 NC_005264.1 + 100381 0.69 0.892185
Target:  5'- -aAUGCUGcgGAUGCc-GCUGCUGCg -3'
miRNA:   3'- gcUGCGACuaCUACGauCGGCGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.