miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 5' -53.1 NC_005264.1 + 155677 0.66 0.972674
Target:  5'- cCGACccguGCggGAUGGacCUGGCCGCgACCa -3'
miRNA:   3'- -GCUG----CGa-CUACUacGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 154037 0.72 0.786241
Target:  5'- gCGGCGCUcGAaGAggagcGCUGGCCGUccugGCCg -3'
miRNA:   3'- -GCUGCGA-CUaCUa----CGAUCGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 153276 0.72 0.786241
Target:  5'- gCGACGUUuuaccUGCUAGCCGCcACCg -3'
miRNA:   3'- -GCUGCGAcuacuACGAUCGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 146961 0.69 0.911457
Target:  5'- uGGCGCUGAgGccGCaGGCUGCggaGCCu -3'
miRNA:   3'- gCUGCGACUaCuaCGaUCGGCGa--UGG- -5'
24414 5' -53.1 NC_005264.1 + 142808 0.68 0.938698
Target:  5'- uGACGCUGcacgGGUGCgagcgcGCCGUgguagACCc -3'
miRNA:   3'- gCUGCGACua--CUACGau----CGGCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 142765 0.71 0.830839
Target:  5'- aCGA-GCUGAcGGUGCUuGCuCGCUACg -3'
miRNA:   3'- -GCUgCGACUaCUACGAuCG-GCGAUGg -5'
24414 5' -53.1 NC_005264.1 + 142495 0.69 0.905274
Target:  5'- aCGACGCUGGcacGGcgcguuuccUGCUuGCCGgUGCCc -3'
miRNA:   3'- -GCUGCGACUa--CU---------ACGAuCGGCgAUGG- -5'
24414 5' -53.1 NC_005264.1 + 133163 0.66 0.972674
Target:  5'- aCGAgGCUGGacgcucccUGAUGCUAcGCaaCGCggcggACCg -3'
miRNA:   3'- -GCUgCGACU--------ACUACGAU-CG--GCGa----UGG- -5'
24414 5' -53.1 NC_005264.1 + 132371 0.67 0.963392
Target:  5'- gGGCGCgagGAUGAacgucgggGCcgAGCCGggGCCc -3'
miRNA:   3'- gCUGCGa--CUACUa-------CGa-UCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 130276 0.71 0.8135
Target:  5'- gCGACGUUGcgGcgGCUA-CCGCggcaGCCa -3'
miRNA:   3'- -GCUGCGACuaCuaCGAUcGGCGa---UGG- -5'
24414 5' -53.1 NC_005264.1 + 130026 0.68 0.93065
Target:  5'- aCGGCGCcgcaggcuuccgcgaUGAUGGuUGCggccagaccGUCGCUGCCg -3'
miRNA:   3'- -GCUGCG---------------ACUACU-ACGau-------CGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 128101 0.68 0.94341
Target:  5'- -cGCGCUGAggacgagcGAUGCcAGCUGggGCCg -3'
miRNA:   3'- gcUGCGACUa-------CUACGaUCGGCgaUGG- -5'
24414 5' -53.1 NC_005264.1 + 125912 0.71 0.839234
Target:  5'- uCGGCGC--GUGuUGCUguugccuuGGCUGCUGCCg -3'
miRNA:   3'- -GCUGCGacUACuACGA--------UCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 116553 0.67 0.95986
Target:  5'- aGACGCcgGAUGA-GCgAGCUGCgGCg -3'
miRNA:   3'- gCUGCGa-CUACUaCGaUCGGCGaUGg -5'
24414 5' -53.1 NC_005264.1 + 116426 0.66 0.980123
Target:  5'- aGGuCGCUGggGgcGuCUGGCCGCggggGCg -3'
miRNA:   3'- gCU-GCGACuaCuaC-GAUCGGCGa---UGg -5'
24414 5' -53.1 NC_005264.1 + 112566 0.66 0.977832
Target:  5'- gGGCGUUGGUGAU-CU--CCGCgGCCa -3'
miRNA:   3'- gCUGCGACUACUAcGAucGGCGaUGG- -5'
24414 5' -53.1 NC_005264.1 + 106693 0.67 0.9561
Target:  5'- aGACGCgcagcaaGAUGuacacaucGCUcGCCGUUACCu -3'
miRNA:   3'- gCUGCGa------CUACua------CGAuCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 105528 0.66 0.980123
Target:  5'- uCGAUGCgGAUgcGAUcGCUGaguGCCGCUAgCu -3'
miRNA:   3'- -GCUGCGaCUA--CUA-CGAU---CGGCGAUgG- -5'
24414 5' -53.1 NC_005264.1 + 103584 1.13 0.003086
Target:  5'- gCGACGCUGAUGAUGCUAGCCGCUACCg -3'
miRNA:   3'- -GCUGCGACUACUACGAUCGGCGAUGG- -5'
24414 5' -53.1 NC_005264.1 + 103187 0.7 0.878156
Target:  5'- aGACguGCUGAUuuUGCUcGCUGCUugCg -3'
miRNA:   3'- gCUG--CGACUAcuACGAuCGGCGAugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.