miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 3' -55 NC_005264.1 + 3458 0.65 0.963421
Target:  5'- cGCCaCGAggGUCUCGGGGgcgaugggcuuGCCGcCGc -3'
miRNA:   3'- aCGGcGCUagCAGAGCCUU-----------UGGCaGC- -5'
24421 3' -55 NC_005264.1 + 86700 0.65 0.963421
Target:  5'- cGCCGCGcgCgGUCUUuGccGCCGUCc -3'
miRNA:   3'- aCGGCGCuaG-CAGAGcCuuUGGCAGc -5'
24421 3' -55 NC_005264.1 + 122485 0.65 0.963421
Target:  5'- cGCCaCGAggGUCUCGGGGgcgaugggcuuGCCGcCGc -3'
miRNA:   3'- aCGGcGCUagCAGAGCCUU-----------UGGCaGC- -5'
24421 3' -55 NC_005264.1 + 147369 0.65 0.963421
Target:  5'- cGCCGCGAUCGccgcUUUCGcg--UCGUCGc -3'
miRNA:   3'- aCGGCGCUAGC----AGAGCcuuuGGCAGC- -5'
24421 3' -55 NC_005264.1 + 130030 0.65 0.963087
Target:  5'- cGCCGCaggcuuccgcgauGAUgGUUgCGGccAGACCGUCGc -3'
miRNA:   3'- aCGGCG-------------CUAgCAGaGCC--UUUGGCAGC- -5'
24421 3' -55 NC_005264.1 + 144803 0.66 0.961387
Target:  5'- cGCCGCuucgCGUCggcacgcacuuggugUCGGAAACaggGUCGg -3'
miRNA:   3'- aCGGCGcua-GCAG---------------AGCCUUUGg--CAGC- -5'
24421 3' -55 NC_005264.1 + 49351 0.66 0.959988
Target:  5'- gGUCGCGGUUGgcaCUCGcGcGACCGUgGc -3'
miRNA:   3'- aCGGCGCUAGCa--GAGC-CuUUGGCAgC- -5'
24421 3' -55 NC_005264.1 + 39790 0.66 0.959988
Target:  5'- gGCCuCGAUCGUCUCGuuggcGAugCG-CGg -3'
miRNA:   3'- aCGGcGCUAGCAGAGCc----UUugGCaGC- -5'
24421 3' -55 NC_005264.1 + 120716 0.66 0.959988
Target:  5'- aGCCgGCGGUCGgg-CGGAGgacgguGCCGgCGa -3'
miRNA:   3'- aCGG-CGCUAGCagaGCCUU------UGGCaGC- -5'
24421 3' -55 NC_005264.1 + 35762 0.66 0.959276
Target:  5'- gGCCGCGA-CGUgggugaagaggCGGAGggcgcgguggcGCCGUCGu -3'
miRNA:   3'- aCGGCGCUaGCAga---------GCCUU-----------UGGCAGC- -5'
24421 3' -55 NC_005264.1 + 154788 0.66 0.959276
Target:  5'- gGCCGCGA-CGUgggugaagaggCGGAGggcgcgguggcGCCGUCGu -3'
miRNA:   3'- aCGGCGCUaGCAga---------GCCUU-----------UGGCAGC- -5'
24421 3' -55 NC_005264.1 + 29677 0.66 0.95634
Target:  5'- aUGCCGCgucGAUCGUCcCGGuga-UGUCa -3'
miRNA:   3'- -ACGGCG---CUAGCAGaGCCuuugGCAGc -5'
24421 3' -55 NC_005264.1 + 62297 0.66 0.95634
Target:  5'- aUGcCCGCGAgcgUCGUC-CGGAcuaGACCcgcccuGUCGu -3'
miRNA:   3'- -AC-GGCGCU---AGCAGaGCCU---UUGG------CAGC- -5'
24421 3' -55 NC_005264.1 + 54138 0.66 0.95634
Target:  5'- cGCCGgGGUCGgugccgacuacaUCgacggugCGGAAACCG-CGc -3'
miRNA:   3'- aCGGCgCUAGC------------AGa------GCCUUUGGCaGC- -5'
24421 3' -55 NC_005264.1 + 44838 0.66 0.95634
Target:  5'- gGUCgGCGAagugucCGUC-CGGguGCCGUCGa -3'
miRNA:   3'- aCGG-CGCUa-----GCAGaGCCuuUGGCAGC- -5'
24421 3' -55 NC_005264.1 + 30217 0.66 0.952471
Target:  5'- cGaCCGCGAUCG-C-CGGuc-CCGUCu -3'
miRNA:   3'- aC-GGCGCUAGCaGaGCCuuuGGCAGc -5'
24421 3' -55 NC_005264.1 + 41399 0.66 0.952471
Target:  5'- gGCCGCGcgcugUGUCUCGGAcacGCCa--- -3'
miRNA:   3'- aCGGCGCua---GCAGAGCCUu--UGGcagc -5'
24421 3' -55 NC_005264.1 + 124039 0.66 0.952471
Target:  5'- cGCCGgGGUCGcCgCGGAGuaCGUCa -3'
miRNA:   3'- aCGGCgCUAGCaGaGCCUUugGCAGc -5'
24421 3' -55 NC_005264.1 + 45249 0.66 0.952471
Target:  5'- gGCCGCuGAacgaaacaucuUUGUCUCGG--GCUGUCc -3'
miRNA:   3'- aCGGCG-CU-----------AGCAGAGCCuuUGGCAGc -5'
24421 3' -55 NC_005264.1 + 149244 0.66 0.952471
Target:  5'- cGaCCGCGAUCG-C-CGGuc-CCGUCu -3'
miRNA:   3'- aC-GGCGCUAGCaGaGCCuuuGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.