miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 26711 0.69 0.637602
Target:  5'- -uGGUuuCUCUUugucuUCGGCGCGCUaacuUGCCc -3'
miRNA:   3'- guCCGcuGAGAG-----AGCCGCGCGA----ACGG- -5'
24425 3' -58.8 NC_005264.1 + 157252 0.69 0.647596
Target:  5'- -uGGCGGC-C-CUCGGCGCGUUggaggugGUCu -3'
miRNA:   3'- guCCGCUGaGaGAGCCGCGCGAa------CGG- -5'
24425 3' -58.8 NC_005264.1 + 33215 0.69 0.647596
Target:  5'- -uGGCGGCg--CUCGGCGUcuacucgagaaGCUUcGCCg -3'
miRNA:   3'- guCCGCUGagaGAGCCGCG-----------CGAA-CGG- -5'
24425 3' -58.8 NC_005264.1 + 88816 0.69 0.647596
Target:  5'- uGGGCGugcagagauuCUCUCUCGGCGacCGCaUGUa -3'
miRNA:   3'- gUCCGCu---------GAGAGAGCCGC--GCGaACGg -5'
24425 3' -58.8 NC_005264.1 + 162670 0.69 0.653588
Target:  5'- -cGGCGGgUCguagguguacggUCGGCGCGCUgcgcGCCg -3'
miRNA:   3'- guCCGCUgAGag----------AGCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 9869 0.69 0.657579
Target:  5'- uCGGGCG-CggUCcCGGCGCGCcacgGCCu -3'
miRNA:   3'- -GUCCGCuGagAGaGCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 128895 0.69 0.657579
Target:  5'- uCGGGCG-CggUCcCGGCGCGCcacgGCCu -3'
miRNA:   3'- -GUCCGCuGagAGaGCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 54564 0.69 0.667543
Target:  5'- uCAGcGCGAUUCUCgUGGgGCGCgacggGUCg -3'
miRNA:   3'- -GUC-CGCUGAGAGaGCCgCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 91064 0.69 0.667543
Target:  5'- -uGGCccacGCUCUCUaGGCGUccguucuucaGCUUGCCa -3'
miRNA:   3'- guCCGc---UGAGAGAgCCGCG----------CGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 97677 0.68 0.677479
Target:  5'- -uGGCGcCUCgUUUCGGUGggaGCUUGCUg -3'
miRNA:   3'- guCCGCuGAG-AGAGCCGCg--CGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 56100 0.68 0.684413
Target:  5'- aCAGGCGGCUCccccgcaccauccuUgUCgaccacuaGGCGCGCgagUGUCg -3'
miRNA:   3'- -GUCCGCUGAG--------------AgAG--------CCGCGCGa--ACGG- -5'
24425 3' -58.8 NC_005264.1 + 43653 0.68 0.687379
Target:  5'- gUAGGUGuACgg--UCGGCGCGCUgcgcGCCg -3'
miRNA:   3'- -GUCCGC-UGagagAGCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 150703 0.68 0.697236
Target:  5'- gAGGCagGGCUCUCggCGGgGCuGCccGCCa -3'
miRNA:   3'- gUCCG--CUGAGAGa-GCCgCG-CGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 31677 0.68 0.697236
Target:  5'- gAGGCagGGCUCUCggCGGgGCuGCccGCCa -3'
miRNA:   3'- gUCCG--CUGAGAGa-GCCgCG-CGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 74663 0.68 0.697236
Target:  5'- gCAGGCcGCUCUUgagcUGGUGCGUUagcGCCa -3'
miRNA:   3'- -GUCCGcUGAGAGa---GCCGCGCGAa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 136706 0.68 0.704106
Target:  5'- uGGGCucgccAUUCUCUCGGCccgcgccacgagccGCGCggugGCCa -3'
miRNA:   3'- gUCCGc----UGAGAGAGCCG--------------CGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 125261 0.68 0.706063
Target:  5'- uCGGcGCGACUUguUCUucgcccuccgcggCGGCGCGCU-GUCg -3'
miRNA:   3'- -GUC-CGCUGAG--AGA-------------GCCGCGCGAaCGG- -5'
24425 3' -58.8 NC_005264.1 + 62993 0.68 0.726461
Target:  5'- -uGGCgGACUC-CaaGGCGUGCUUGgCg -3'
miRNA:   3'- guCCG-CUGAGaGagCCGCGCGAACgG- -5'
24425 3' -58.8 NC_005264.1 + 67728 0.68 0.726461
Target:  5'- gGGGCGGCUucggggcaaaggCUCUCagcgaaaucagGGCGuCGCUUaucGCCa -3'
miRNA:   3'- gUCCGCUGA------------GAGAG-----------CCGC-GCGAA---CGG- -5'
24425 3' -58.8 NC_005264.1 + 69402 0.68 0.726461
Target:  5'- uGGGCGGgUa----GGCGCGCcUGCCg -3'
miRNA:   3'- gUCCGCUgAgagagCCGCGCGaACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.