miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 3' -50.3 NC_005264.1 + 95432 1.13 0.006799
Target:  5'- aGAACCCAAAGCCGUCGUGGAAUACGCu -3'
miRNA:   3'- -CUUGGGUUUCGGCAGCACCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 158137 0.75 0.796484
Target:  5'- uGGACCagcuGCUGUCGUGGAcgcgGCGCc -3'
miRNA:   3'- -CUUGGguuuCGGCAGCACCUua--UGCG- -5'
24429 3' -50.3 NC_005264.1 + 39110 0.75 0.796484
Target:  5'- uGGACCagcuGCUGUCGUGGAcgcgGCGCc -3'
miRNA:   3'- -CUUGGguuuCGGCAGCACCUua--UGCG- -5'
24429 3' -50.3 NC_005264.1 + 85579 0.74 0.832314
Target:  5'- aGGCCCAAGGCCGUauc-GGAUAUGCu -3'
miRNA:   3'- cUUGGGUUUCGGCAgcacCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 138471 0.74 0.84746
Target:  5'- gGAGCCgCGAAGCCGgucaugccagagCGgcgGGGAUAUGCc -3'
miRNA:   3'- -CUUGG-GUUUCGGCa-----------GCa--CCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 92706 0.73 0.857186
Target:  5'- gGAGCUUAuuGCCGcacgCG-GGAGUACGCg -3'
miRNA:   3'- -CUUGGGUuuCGGCa---GCaCCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 121535 0.73 0.857186
Target:  5'- aAGCUCAugcGGGCCGauagCGUGGAAgucgACGCg -3'
miRNA:   3'- cUUGGGU---UUCGGCa---GCACCUUa---UGCG- -5'
24429 3' -50.3 NC_005264.1 + 155933 0.73 0.887291
Target:  5'- -cGCCCAcggaAAGCCGcgCGcUGGGAcUGCGCg -3'
miRNA:   3'- cuUGGGU----UUCGGCa-GC-ACCUU-AUGCG- -5'
24429 3' -50.3 NC_005264.1 + 89122 0.73 0.887291
Target:  5'- aGAACCCGcgcaAGGCCGUCGguacugGCGCc -3'
miRNA:   3'- -CUUGGGU----UUCGGCAGCaccuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 154813 0.72 0.907377
Target:  5'- aGGGCgCGGuggcGCCGUCGUGGcggGCGCc -3'
miRNA:   3'- -CUUGgGUUu---CGGCAGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 35787 0.72 0.907377
Target:  5'- aGGGCgCGGuggcGCCGUCGUGGcggGCGCc -3'
miRNA:   3'- -CUUGgGUUu---CGGCAGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 144507 0.72 0.913575
Target:  5'- aGugCCGAAGgCGUCGUGGGcagAgGCa -3'
miRNA:   3'- cUugGGUUUCgGCAGCACCUua-UgCG- -5'
24429 3' -50.3 NC_005264.1 + 63078 0.71 0.925214
Target:  5'- cAGCUCGgcgaGGGCCGUCGcGGAaaggccuaccucGUGCGCa -3'
miRNA:   3'- cUUGGGU----UUCGGCAGCaCCU------------UAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 94424 0.71 0.925214
Target:  5'- -uGCgCGAucGCUGaCGUGGGAUGCGCg -3'
miRNA:   3'- cuUGgGUUu-CGGCaGCACCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 131336 0.7 0.949875
Target:  5'- cGAGCCUGGAGCCGccugaccuuccUCGUGacuggGCGCa -3'
miRNA:   3'- -CUUGGGUUUCGGC-----------AGCACcuua-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 12309 0.7 0.949875
Target:  5'- cGAGCCUGGAGCCGccugaccuuccUCGUGacuggGCGCa -3'
miRNA:   3'- -CUUGGGUUUCGGC-----------AGCACcuua-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 33666 0.7 0.954058
Target:  5'- cGACCCAGguaaccGGCUGaUCGUGGcuaACGCg -3'
miRNA:   3'- cUUGGGUU------UCGGC-AGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 87633 0.7 0.957999
Target:  5'- aGGGCCgAugcAGCCG-CGUGGG--GCGCg -3'
miRNA:   3'- -CUUGGgUu--UCGGCaGCACCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 33941 0.7 0.961702
Target:  5'- uGAGCCCGccGUCGUCGaGGAcgagcgGUGcCGCa -3'
miRNA:   3'- -CUUGGGUuuCGGCAGCaCCU------UAU-GCG- -5'
24429 3' -50.3 NC_005264.1 + 12190 0.7 0.965172
Target:  5'- --cCCCGAGGCaugGUCGcagGGcGAUGCGCg -3'
miRNA:   3'- cuuGGGUUUCGg--CAGCa--CC-UUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.