Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24429 | 3' | -50.3 | NC_005264.1 | + | 143667 | 0.68 | 0.98859 |
Target: 5'- --cCCCGGAGCCaucauccugGUUGUGauGUGCGCg -3' miRNA: 3'- cuuGGGUUUCGG---------CAGCACcuUAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 7403 | 0.69 | 0.968415 |
Target: 5'- --cCCCGgcGCCGUCGUccauuGGuucGUGCGCc -3' miRNA: 3'- cuuGGGUuuCGGCAGCA-----CCu--UAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 124037 | 0.69 | 0.968415 |
Target: 5'- -cGCgCCGGGGUCGcCGcGGAGUACGUc -3' miRNA: 3'- cuUG-GGUUUCGGCaGCaCCUUAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 108922 | 0.69 | 0.971438 |
Target: 5'- gGAACCC-GAGCCG-CGUGGcuuucaGCa -3' miRNA: 3'- -CUUGGGuUUCGGCaGCACCuuaug-CG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 155186 | 0.69 | 0.974247 |
Target: 5'- cGAGCCCuccGAGCCGgcaggcggcguuUCGUGGu-UGgGCg -3' miRNA: 3'- -CUUGGGu--UUCGGC------------AGCACCuuAUgCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 98431 | 0.69 | 0.976849 |
Target: 5'- cGGACUaucuGAGCCaGUCGUGGAGcucgGCGg -3' miRNA: 3'- -CUUGGgu--UUCGG-CAGCACCUUa---UGCg -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 58012 | 0.69 | 0.979253 |
Target: 5'- cGGCCCcggcggacAGGCCGUCGUGcg--GCGCc -3' miRNA: 3'- cUUGGGu-------UUCGGCAGCACcuuaUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 130903 | 0.68 | 0.981039 |
Target: 5'- cGAGCUCAGAGCCGagccgcgagggcCGUGGGAaaAUGCc -3' miRNA: 3'- -CUUGGGUUUCGGCa-----------GCACCUUa-UGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 51464 | 0.68 | 0.981467 |
Target: 5'- -cACCCu--GaaGUCGUGGGAcACGCc -3' miRNA: 3'- cuUGGGuuuCggCAGCACCUUaUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 34038 | 0.7 | 0.966496 |
Target: 5'- aGGAuCCUAAAGaacggcagcguuaucCCGUUGUGGAAgccGCGCa -3' miRNA: 3'- -CUU-GGGUUUC---------------GGCAGCACCUUa--UGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 131217 | 0.7 | 0.965172 |
Target: 5'- --cCCCGAGGCaugGUCGcagGGcGAUGCGCg -3' miRNA: 3'- cuuGGGUUUCGg--CAGCa--CC-UUAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 33941 | 0.7 | 0.961702 |
Target: 5'- uGAGCCCGccGUCGUCGaGGAcgagcgGUGcCGCa -3' miRNA: 3'- -CUUGGGUuuCGGCAGCaCCU------UAU-GCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 138471 | 0.74 | 0.84746 |
Target: 5'- gGAGCCgCGAAGCCGgucaugccagagCGgcgGGGAUAUGCc -3' miRNA: 3'- -CUUGG-GUUUCGGCa-----------GCa--CCUUAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 92706 | 0.73 | 0.857186 |
Target: 5'- gGAGCUUAuuGCCGcacgCG-GGAGUACGCg -3' miRNA: 3'- -CUUGGGUuuCGGCa---GCaCCUUAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 89122 | 0.73 | 0.887291 |
Target: 5'- aGAACCCGcgcaAGGCCGUCGguacugGCGCc -3' miRNA: 3'- -CUUGGGU----UUCGGCAGCaccuuaUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 154813 | 0.72 | 0.907377 |
Target: 5'- aGGGCgCGGuggcGCCGUCGUGGcggGCGCc -3' miRNA: 3'- -CUUGgGUUu---CGGCAGCACCuuaUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 94424 | 0.71 | 0.925214 |
Target: 5'- -uGCgCGAucGCUGaCGUGGGAUGCGCg -3' miRNA: 3'- cuUGgGUUu-CGGCaGCACCUUAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 63078 | 0.71 | 0.925214 |
Target: 5'- cAGCUCGgcgaGGGCCGUCGcGGAaaggccuaccucGUGCGCa -3' miRNA: 3'- cUUGGGU----UUCGGCAGCaCCU------------UAUGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 131336 | 0.7 | 0.949875 |
Target: 5'- cGAGCCUGGAGCCGccugaccuuccUCGUGacuggGCGCa -3' miRNA: 3'- -CUUGGGUUUCGGC-----------AGCACcuua-UGCG- -5' |
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24429 | 3' | -50.3 | NC_005264.1 | + | 33666 | 0.7 | 0.954058 |
Target: 5'- cGACCCAGguaaccGGCUGaUCGUGGcuaACGCg -3' miRNA: 3'- cUUGGGUU------UCGGC-AGCACCuuaUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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