miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 3' -50.3 NC_005264.1 + 4736 0.66 0.995783
Target:  5'- -uGCCCGccGAGCCGgCGUccgGGggUggaccgccGCGCg -3'
miRNA:   3'- cuUGGGU--UUCGGCaGCA---CCuuA--------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 5010 0.69 0.968415
Target:  5'- -cGCgCCGGGGUCGcCGcGGAGUACGUc -3'
miRNA:   3'- cuUG-GGUUUCGGCaGCaCCUUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 5031 0.66 0.996947
Target:  5'- aGGCCaCGAGGUuccgCGUCGUGG---GCGCc -3'
miRNA:   3'- cUUGG-GUUUCG----GCAGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 7403 0.69 0.968415
Target:  5'- --cCCCGgcGCCGUCGUccauuGGuucGUGCGCc -3'
miRNA:   3'- cuuGGGUuuCGGCAGCA-----CCu--UAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 11877 0.68 0.981039
Target:  5'- cGAGCUCAGAGCCGagccgcgagggcCGUGGGAaaAUGCc -3'
miRNA:   3'- -CUUGGGUUUCGGCa-----------GCACCUUa-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 12190 0.7 0.965172
Target:  5'- --cCCCGAGGCaugGUCGcagGGcGAUGCGCg -3'
miRNA:   3'- cuuGGGUUUCGg--CAGCa--CC-UUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 12309 0.7 0.949875
Target:  5'- cGAGCCUGGAGCCGccugaccuuccUCGUGacuggGCGCa -3'
miRNA:   3'- -CUUGGGUUUCGGC-----------AGCACcuua-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 12676 0.67 0.989984
Target:  5'- aGAACCgCAcGGGuCCGUCGcGGAccACGCc -3'
miRNA:   3'- -CUUGG-GU-UUC-GGCAGCaCCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 14901 0.68 0.983498
Target:  5'- cGACCCuucGCCgGUCGUGuacAUGCGCu -3'
miRNA:   3'- cUUGGGuuuCGG-CAGCACcu-UAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 16558 0.66 0.995783
Target:  5'- uGGCgCAAuAGCCGUCGUaagGGAccGCGUa -3'
miRNA:   3'- cUUGgGUU-UCGGCAGCA---CCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 31953 0.66 0.99558
Target:  5'- uGAGCUCGcgaguggcggcgacGGGCCG-CGUGuccGAUGCGCg -3'
miRNA:   3'- -CUUGGGU--------------UUCGGCaGCACc--UUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 33666 0.7 0.954058
Target:  5'- cGACCCAGguaaccGGCUGaUCGUGGcuaACGCg -3'
miRNA:   3'- cUUGGGUU------UCGGC-AGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 33941 0.7 0.961702
Target:  5'- uGAGCCCGccGUCGUCGaGGAcgagcgGUGcCGCa -3'
miRNA:   3'- -CUUGGGUuuCGGCAGCaCCU------UAU-GCG- -5'
24429 3' -50.3 NC_005264.1 + 34038 0.7 0.966496
Target:  5'- aGGAuCCUAAAGaacggcagcguuaucCCGUUGUGGAAgccGCGCa -3'
miRNA:   3'- -CUU-GGGUUUC---------------GGCAGCACCUUa--UGCG- -5'
24429 3' -50.3 NC_005264.1 + 35787 0.72 0.907377
Target:  5'- aGGGCgCGGuggcGCCGUCGUGGcggGCGCc -3'
miRNA:   3'- -CUUGgGUUu---CGGCAGCACCuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 36159 0.69 0.974247
Target:  5'- cGAGCCCuccGAGCCGgcaggcggcguuUCGUGGu-UGgGCg -3'
miRNA:   3'- -CUUGGGu--UUCGGC------------AGCACCuuAUgCG- -5'
24429 3' -50.3 NC_005264.1 + 39110 0.75 0.796484
Target:  5'- uGGACCagcuGCUGUCGUGGAcgcgGCGCc -3'
miRNA:   3'- -CUUGGguuuCGGCAGCACCUua--UGCG- -5'
24429 3' -50.3 NC_005264.1 + 44891 0.66 0.996947
Target:  5'- cGGGCCCGucGUCGUCuGgggcgGGAGgagagauccgGCGCa -3'
miRNA:   3'- -CUUGGGUuuCGGCAG-Ca----CCUUa---------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 46612 0.69 0.968415
Target:  5'- --uCCCGGcaCCGUCGUGGGAccGCGUg -3'
miRNA:   3'- cuuGGGUUucGGCAGCACCUUa-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 47515 0.67 0.994278
Target:  5'- aGAGCCCGAcuaggguuauauAGCuCGUCa-GGAAgggcUGCGCg -3'
miRNA:   3'- -CUUGGGUU------------UCG-GCAGcaCCUU----AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.