miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 90720 0.66 0.672589
Target:  5'- cCG-GCaGGCgGCGCUCCcucaaacgagAGAUacGCGGCc -3'
miRNA:   3'- -GCgCGaCCGgCGCGAGG----------UCUG--UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 41632 0.66 0.672589
Target:  5'- aGCgGCUGGCCaGaUGCggCAG-CGCGGCc -3'
miRNA:   3'- gCG-CGACCGG-C-GCGagGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 119294 0.66 0.672589
Target:  5'- uCGCGgUGGCUGggcaGCUgCAGACGuuGCu -3'
miRNA:   3'- -GCGCgACCGGCg---CGAgGUCUGUgcCG- -5'
24452 3' -62.1 NC_005264.1 + 7173 0.66 0.672589
Target:  5'- cCGCGCacgGGUCGgGUuccccgucguugUCUgggacaacgcgAGACACGGCg -3'
miRNA:   3'- -GCGCGa--CCGGCgCG------------AGG-----------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 75646 0.66 0.672589
Target:  5'- uGUGCUGcaGCaggGCGUcgCCAGAUugGGUa -3'
miRNA:   3'- gCGCGAC--CGg--CGCGa-GGUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 127842 0.66 0.672589
Target:  5'- cCGCgGC-GGCCgGCGgUCUAGAaccCGGCg -3'
miRNA:   3'- -GCG-CGaCCGG-CGCgAGGUCUgu-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 25593 0.66 0.672589
Target:  5'- --aGCUGGCCGcCGgaCgAGA-GCGGCg -3'
miRNA:   3'- gcgCGACCGGC-GCgaGgUCUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 144267 0.66 0.662876
Target:  5'- uCGCuGCcuugGGCCGgcggaugcCGCUCCGacuGACGcCGGCg -3'
miRNA:   3'- -GCG-CGa---CCGGC--------GCGAGGU---CUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 5581 0.66 0.662876
Target:  5'- aGCGcCUGGCUcaGUucCUCCAGAU-CGGCg -3'
miRNA:   3'- gCGC-GACCGG--CGc-GAGGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 12712 0.66 0.662876
Target:  5'- uGCGCgGGCCcucugacaUGCUCCgcccaacuGGACGCuGGCa -3'
miRNA:   3'- gCGCGaCCGGc-------GCGAGG--------UCUGUG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 124608 0.66 0.662876
Target:  5'- aGCGcCUGGCUcaGUucCUCCAGAU-CGGCg -3'
miRNA:   3'- gCGC-GACCGG--CGc-GAGGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 30079 0.66 0.662876
Target:  5'- gGCGCc-GCCGCGC-CCGGACAgaaucGCg -3'
miRNA:   3'- gCGCGacCGGCGCGaGGUCUGUgc---CG- -5'
24452 3' -62.1 NC_005264.1 + 16155 0.66 0.661903
Target:  5'- uCGCGCagGGCggcaaugccgcccUGCGCggaggUCGGuCGCGGCa -3'
miRNA:   3'- -GCGCGa-CCG-------------GCGCGa----GGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 100259 0.66 0.659957
Target:  5'- uCGCGC-GGucaauuuuaucgauCCGCGCagCGGGCuCGGCu -3'
miRNA:   3'- -GCGCGaCC--------------GGCGCGagGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 108587 0.66 0.657036
Target:  5'- aGCGCUcccuGCgGCGCUCUAGcagccuagcgugaacGCAcCGGCc -3'
miRNA:   3'- gCGCGAc---CGgCGCGAGGUC---------------UGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 107209 0.66 0.654114
Target:  5'- gGCgGC-GGCgCGCGCgguuggcauucggcgCCAGcCGCGGCu -3'
miRNA:   3'- gCG-CGaCCG-GCGCGa--------------GGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 124855 0.66 0.653139
Target:  5'- gGCGgUGGCCGCcacucGC-CUGGcCGCGGUu -3'
miRNA:   3'- gCGCgACCGGCG-----CGaGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 15193 0.66 0.653139
Target:  5'- uGCaaGCUGGCCucucuguuuGaCGC-CCuuGACGCGGCg -3'
miRNA:   3'- gCG--CGACCGG---------C-GCGaGGu-CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 161187 0.66 0.653139
Target:  5'- gGCGCUGGCguaaCGC-CCGGAaagagAUGGCa -3'
miRNA:   3'- gCGCGACCGgc--GCGaGGUCUg----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 55828 0.66 0.653139
Target:  5'- aGcCGgUGGCgGCGCggCuGACugGGCc -3'
miRNA:   3'- gC-GCgACCGgCGCGagGuCUGugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.