miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 123488 0.73 0.287026
Target:  5'- uGCGgUGGCCGCGCgguugCUGGGCgaugugcucGCGGUg -3'
miRNA:   3'- gCGCgACCGGCGCGa----GGUCUG---------UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 103015 0.73 0.291534
Target:  5'- gCGCGCUGGCguacgcgacccucaCGUcuacguacgGCUCCgcggcGGACACGGCc -3'
miRNA:   3'- -GCGCGACCG--------------GCG---------CGAGG-----UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 99908 0.73 0.293483
Target:  5'- gGCGCggcuugcGGCCGCGCaagCCc-GCGCGGCu -3'
miRNA:   3'- gCGCGa------CCGGCGCGa--GGucUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 120536 0.73 0.306734
Target:  5'- aCGcCGCUGGCUGCGCcguuuuUUgGGGCcccGCGGCg -3'
miRNA:   3'- -GC-GCGACCGGCGCG------AGgUCUG---UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 1509 0.73 0.306734
Target:  5'- aCGcCGCUGGCUGCGCcguuuuUUgGGGCcccGCGGCg -3'
miRNA:   3'- -GC-GCGACCGGCGCG------AGgUCUG---UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 41392 0.72 0.320439
Target:  5'- aCGCGUaGGCCGCGCgcugugUCuCGGACACGcCa -3'
miRNA:   3'- -GCGCGaCCGGCGCG------AG-GUCUGUGCcG- -5'
24452 3' -62.1 NC_005264.1 + 37351 0.72 0.325342
Target:  5'- -uUGUUGGCCGCGCUcgaaaaagagcgagCCuccgagcaGGGCGCGGCa -3'
miRNA:   3'- gcGCGACCGGCGCGA--------------GG--------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 66604 0.72 0.327461
Target:  5'- uGgGCUGcGCCGCGUUgCCGGcgccguCGCGGCc -3'
miRNA:   3'- gCgCGAC-CGGCGCGA-GGUCu-----GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 86137 0.72 0.327461
Target:  5'- aGCGaguUGcGCCGCGCUCCGcgccaaGCugGGCa -3'
miRNA:   3'- gCGCg--AC-CGGCGCGAGGUc-----UGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 145284 0.72 0.327461
Target:  5'- aCGgGgaGGCCGCGgUCUAGGCuucCGGUu -3'
miRNA:   3'- -GCgCgaCCGGCGCgAGGUCUGu--GCCG- -5'
24452 3' -62.1 NC_005264.1 + 119894 0.72 0.339659
Target:  5'- gGCGUU-GCCGCGC-CCGGACguacgacuggguguACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCGaGGUCUG--------------UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 868 0.72 0.339659
Target:  5'- gGCGUU-GCCGCGC-CCGGACguacgacuggguguACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCGaGGUCUG--------------UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 21190 0.72 0.341845
Target:  5'- aCGUGCUGGCCGgcCGUagUAGACucaauACGGCg -3'
miRNA:   3'- -GCGCGACCGGC--GCGagGUCUG-----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 6891 0.72 0.349207
Target:  5'- cCGCGa--GCCGCGCagucCCAGcGCGCGGCu -3'
miRNA:   3'- -GCGCgacCGGCGCGa---GGUC-UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 2924 0.71 0.355928
Target:  5'- aCGC-UUGGCUGCgaGCUCCAGcgugcuuugagaaACGCGGCu -3'
miRNA:   3'- -GCGcGACCGGCG--CGAGGUC-------------UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 3960 0.71 0.356681
Target:  5'- aCGUcCUGGCCGCGCcggCCGGcuuuaccgccaGCAgGGCg -3'
miRNA:   3'- -GCGcGACCGGCGCGa--GGUC-----------UGUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 142874 0.71 0.356681
Target:  5'- uGCGUcgacucGcGCCGCGCcuuucUCCAGuCACGGCg -3'
miRNA:   3'- gCGCGa-----C-CGGCGCG-----AGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 155948 0.71 0.364266
Target:  5'- gCGCGCUGGgacugCGCgGCUCgCGGACGCucuGGCu -3'
miRNA:   3'- -GCGCGACCg----GCG-CGAG-GUCUGUG---CCG- -5'
24452 3' -62.1 NC_005264.1 + 122986 0.71 0.364266
Target:  5'- aCGUcCUGGCCGCGCcggCCGGcuuuaccgccaaGCAgGGCg -3'
miRNA:   3'- -GCGcGACCGGCGCGa--GGUC------------UGUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 79990 0.71 0.364266
Target:  5'- cCGaUGCcGGCCGCGCggaagaggAGGCGCGGCa -3'
miRNA:   3'- -GC-GCGaCCGGCGCGagg-----UCUGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.