miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 74242 1.11 0.000645
Target:  5'- gCGCGCUGGCCGCGCUCCAGACACGGCg -3'
miRNA:   3'- -GCGCGACCGGCGCGAGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 136453 0.84 0.05416
Target:  5'- gGCGCUgaGGCCGCGCU-CAGAgACGGCg -3'
miRNA:   3'- gCGCGA--CCGGCGCGAgGUCUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 98674 0.81 0.090322
Target:  5'- aGUGCUGGCgGCGCUugcacaccggCCGGAuCGCGGCg -3'
miRNA:   3'- gCGCGACCGgCGCGA----------GGUCU-GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 25604 0.77 0.152331
Target:  5'- aGCGCcgGGCCgGCGUUgCGGAaCACGGCg -3'
miRNA:   3'- gCGCGa-CCGG-CGCGAgGUCU-GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 61241 0.77 0.152331
Target:  5'- gGCGaUGG-CGCGCUCCAGcuCACGGCg -3'
miRNA:   3'- gCGCgACCgGCGCGAGGUCu-GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 119504 0.76 0.180447
Target:  5'- uGCGCaGGgCGUGCUCC-GAgGCGGCa -3'
miRNA:   3'- gCGCGaCCgGCGCGAGGuCUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 67377 0.76 0.203261
Target:  5'- cCGCGCUcGCUGCGC-CCGccGGCGCGGUa -3'
miRNA:   3'- -GCGCGAcCGGCGCGaGGU--CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 98021 0.76 0.203261
Target:  5'- gGUGCUGGCCGa-CUUCAGccuCGCGGCa -3'
miRNA:   3'- gCGCGACCGGCgcGAGGUCu--GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 72677 0.76 0.203261
Target:  5'- aGCcucaacCUGGCgGCGUUCguGACGCGGCg -3'
miRNA:   3'- gCGc-----GACCGgCGCGAGguCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 55151 0.75 0.223277
Target:  5'- uGUGCUGGCgcaGCGUaugcggccUCUGGGCGCGGCu -3'
miRNA:   3'- gCGCGACCGg--CGCG--------AGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 23390 0.74 0.239369
Target:  5'- aCGC-CUGGCCGCcCUCUuGugACGGCc -3'
miRNA:   3'- -GCGcGACCGGCGcGAGGuCugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 93165 0.74 0.244945
Target:  5'- -cCGUcgGGgCGcCGCUCCAGACugGGCg -3'
miRNA:   3'- gcGCGa-CCgGC-GCGAGGUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 132616 0.74 0.250628
Target:  5'- cCGCGCUGGCCGCGgaaaCCuauguuaccGACGCGGa -3'
miRNA:   3'- -GCGCGACCGGCGCga--GGu--------CUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 39225 0.74 0.250628
Target:  5'- gGCGCUGGCggggagggccUGCGUUCCcGGCuCGGCu -3'
miRNA:   3'- gCGCGACCG----------GCGCGAGGuCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 158252 0.74 0.250628
Target:  5'- gGCGCUGGCggggagggccUGCGUUCCcGGCuCGGCu -3'
miRNA:   3'- gCGCGACCG----------GCGCGAGGuCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 250 0.73 0.27445
Target:  5'- uGUGC-GGCgGCGCU--GGACGCGGCa -3'
miRNA:   3'- gCGCGaCCGgCGCGAggUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 95389 0.73 0.27445
Target:  5'- aCGaGCUGGCCGCGCUggugcaggggcuUCAGAUA-GGCg -3'
miRNA:   3'- -GCgCGACCGGCGCGA------------GGUCUGUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 85064 0.73 0.280054
Target:  5'- gGUGCgucucugcGGCCGCGUcgucagaUUCGGAUACGGCg -3'
miRNA:   3'- gCGCGa-------CCGGCGCG-------AGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 101741 0.73 0.280682
Target:  5'- aGCGUcuUGGCggCGCGCUCCccaaaggacguGGugGCGGCc -3'
miRNA:   3'- gCGCG--ACCG--GCGCGAGG-----------UCugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 123488 0.73 0.287026
Target:  5'- uGCGgUGGCCGCGCgguugCUGGGCgaugugcucGCGGUg -3'
miRNA:   3'- gCGCgACCGGCGCGa----GGUCUG---------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.