miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 159759 0.66 0.643388
Target:  5'- aCGgGUccucGGCCGC-CgCCAGuCGCGGCg -3'
miRNA:   3'- -GCgCGa---CCGGCGcGaGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 12712 0.66 0.662876
Target:  5'- uGCGCgGGCCcucugacaUGCUCCgcccaacuGGACGCuGGCa -3'
miRNA:   3'- gCGCGaCCGGc-------GCGAGG--------UCUGUG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 76337 0.66 0.653139
Target:  5'- aCGaaaGUUGGCCGCGCggcgacugcgCgCAGGCGCguuGGUa -3'
miRNA:   3'- -GCg--CGACCGGCGCGa---------G-GUCUGUG---CCG- -5'
24452 3' -62.1 NC_005264.1 + 10225 0.66 0.633629
Target:  5'- -uCGCUGGCCucGgGCUCaauagCGGGCGCGuGCu -3'
miRNA:   3'- gcGCGACCGG--CgCGAG-----GUCUGUGC-CG- -5'
24452 3' -62.1 NC_005264.1 + 34274 0.66 0.633629
Target:  5'- cCGCGU--GCUGCGCUCC-GcCGCGGa -3'
miRNA:   3'- -GCGCGacCGGCGCGAGGuCuGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 124855 0.66 0.653139
Target:  5'- gGCGgUGGCCGCcacucGC-CUGGcCGCGGUu -3'
miRNA:   3'- gCGCgACCGGCG-----CGaGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 149534 0.66 0.632653
Target:  5'- cCGCGC-GGCCGUccuccggggaGCUCCAcGACccgccucGCuGGCg -3'
miRNA:   3'- -GCGCGaCCGGCG----------CGAGGU-CUG-------UG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 15193 0.66 0.653139
Target:  5'- uGCaaGCUGGCCucucuguuuGaCGC-CCuuGACGCGGCg -3'
miRNA:   3'- gCG--CGACCGG---------C-GCGaGGu-CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 120204 0.66 0.643388
Target:  5'- gCGCGCgaugggGGUacgcaGCGgaCCGGGCguccGCGGCc -3'
miRNA:   3'- -GCGCGa-----CCGg----CGCgaGGUCUG----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 8130 0.66 0.633629
Target:  5'- uGCGCUuuaGCCuCGCUCUuGACAgCGGUa -3'
miRNA:   3'- gCGCGAc--CGGcGCGAGGuCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 127092 0.66 0.643388
Target:  5'- aCGuCGC-GGCCGCag-UCGGGCACGGg -3'
miRNA:   3'- -GC-GCGaCCGGCGcgaGGUCUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 130801 0.66 0.633629
Target:  5'- gGCGcCUGGCuCGCaCUCCGgGGCAgcccgaGGCg -3'
miRNA:   3'- gCGC-GACCG-GCGcGAGGU-CUGUg-----CCG- -5'
24452 3' -62.1 NC_005264.1 + 162214 0.66 0.633629
Target:  5'- uCGCGCUGcCUGCGacgCGGGC-CGGCg -3'
miRNA:   3'- -GCGCGACcGGCGCgagGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 55828 0.66 0.653139
Target:  5'- aGcCGgUGGCgGCGCggCuGACugGGCc -3'
miRNA:   3'- gC-GCgACCGgCGCGagGuCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 161187 0.66 0.653139
Target:  5'- gGCGCUGGCguaaCGC-CCGGAaagagAUGGCa -3'
miRNA:   3'- gCGCGACCGgc--GCGaGGUCUg----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 124608 0.66 0.662876
Target:  5'- aGCGcCUGGCUcaGUucCUCCAGAU-CGGCg -3'
miRNA:   3'- gCGC-GACCGG--CGc-GAGGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 131581 0.66 0.653139
Target:  5'- gGCGUUcGCCGCGaagauaCCgcugaggggGGACACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCga----GG---------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 107209 0.66 0.654114
Target:  5'- gGCgGC-GGCgCGCGCgguuggcauucggcgCCAGcCGCGGCu -3'
miRNA:   3'- gCG-CGaCCG-GCGCGa--------------GGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 82050 0.66 0.633629
Target:  5'- uGCGCaGGCgCGCcucCUCUAGAgCGCGGa -3'
miRNA:   3'- gCGCGaCCG-GCGc--GAGGUCU-GUGCCg -5'
24452 3' -62.1 NC_005264.1 + 152296 0.66 0.633629
Target:  5'- aCGCGCgauCCGCGCcCCuGAgGgCGGCg -3'
miRNA:   3'- -GCGCGaccGGCGCGaGGuCUgU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.