miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 150075 0.71 0.371963
Target:  5'- uCGUGC-GGCUGCGUUgCGGACGgcaGGCg -3'
miRNA:   3'- -GCGCGaCCGGCGCGAgGUCUGUg--CCG- -5'
24452 3' -62.1 NC_005264.1 + 37351 0.72 0.325342
Target:  5'- -uUGUUGGCCGCGCUcgaaaaagagcgagCCuccgagcaGGGCGCGGCa -3'
miRNA:   3'- gcGCGACCGGCGCGA--------------GG--------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 66604 0.72 0.327461
Target:  5'- uGgGCUGcGCCGCGUUgCCGGcgccguCGCGGCc -3'
miRNA:   3'- gCgCGAC-CGGCGCGA-GGUCu-----GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 145284 0.72 0.327461
Target:  5'- aCGgGgaGGCCGCGgUCUAGGCuucCGGUu -3'
miRNA:   3'- -GCgCgaCCGGCGCgAGGUCUGu--GCCG- -5'
24452 3' -62.1 NC_005264.1 + 119894 0.72 0.339659
Target:  5'- gGCGUU-GCCGCGC-CCGGACguacgacuggguguACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCGaGGUCUG--------------UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 21190 0.72 0.341845
Target:  5'- aCGUGCUGGCCGgcCGUagUAGACucaauACGGCg -3'
miRNA:   3'- -GCGCGACCGGC--GCGagGUCUG-----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 6891 0.72 0.349207
Target:  5'- cCGCGa--GCCGCGCagucCCAGcGCGCGGCu -3'
miRNA:   3'- -GCGCgacCGGCGCGa---GGUC-UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 2924 0.71 0.355928
Target:  5'- aCGC-UUGGCUGCgaGCUCCAGcgugcuuugagaaACGCGGCu -3'
miRNA:   3'- -GCGcGACCGGCG--CGAGGUC-------------UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 122986 0.71 0.364266
Target:  5'- aCGUcCUGGCCGCGCcggCCGGcuuuaccgccaaGCAgGGCg -3'
miRNA:   3'- -GCGcGACCGGCGCGa--GGUC------------UGUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 41392 0.72 0.320439
Target:  5'- aCGCGUaGGCCGCGCgcugugUCuCGGACACGcCa -3'
miRNA:   3'- -GCGCGaCCGGCGCG------AG-GUCUGUGCcG- -5'
24452 3' -62.1 NC_005264.1 + 120536 0.73 0.306734
Target:  5'- aCGcCGCUGGCUGCGCcguuuuUUgGGGCcccGCGGCg -3'
miRNA:   3'- -GC-GCGACCGGCGCG------AGgUCUG---UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 16560 0.73 0.287026
Target:  5'- aGCGCggugGGCgGCGC-CgGGGCGgCGGCg -3'
miRNA:   3'- gCGCGa---CCGgCGCGaGgUCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 61241 0.77 0.152331
Target:  5'- gGCGaUGG-CGCGCUCCAGcuCACGGCg -3'
miRNA:   3'- gCGCgACCgGCGCGAGGUCu-GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 98021 0.76 0.203261
Target:  5'- gGUGCUGGCCGa-CUUCAGccuCGCGGCa -3'
miRNA:   3'- gCGCGACCGGCgcGAGGUCu--GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 72677 0.76 0.203261
Target:  5'- aGCcucaacCUGGCgGCGUUCguGACGCGGCg -3'
miRNA:   3'- gCGc-----GACCGgCGCGAGguCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 67377 0.76 0.203261
Target:  5'- cCGCGCUcGCUGCGC-CCGccGGCGCGGUa -3'
miRNA:   3'- -GCGCGAcCGGCGCGaGGU--CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 55151 0.75 0.223277
Target:  5'- uGUGCUGGCgcaGCGUaugcggccUCUGGGCGCGGCu -3'
miRNA:   3'- gCGCGACCGg--CGCG--------AGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 23390 0.74 0.239369
Target:  5'- aCGC-CUGGCCGCcCUCUuGugACGGCc -3'
miRNA:   3'- -GCGcGACCGGCGcGAGGuCugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 158252 0.74 0.250628
Target:  5'- gGCGCUGGCggggagggccUGCGUUCCcGGCuCGGCu -3'
miRNA:   3'- gCGCGACCG----------GCGCGAGGuCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 250 0.73 0.27445
Target:  5'- uGUGC-GGCgGCGCU--GGACGCGGCa -3'
miRNA:   3'- gCGCGaCCGgCGCGAggUCUGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.