miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 84647 0.66 0.691919
Target:  5'- uGcCGCU--CCGCGCauccggcuuUCCGGGCACaGGCg -3'
miRNA:   3'- gC-GCGAccGGCGCG---------AGGUCUGUG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 152241 0.66 0.653139
Target:  5'- uCGCGCgauaUGGaUCGCGgUCgCGGACuuGGCc -3'
miRNA:   3'- -GCGCG----ACC-GGCGCgAG-GUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 48083 0.66 0.653139
Target:  5'- aGCGCaauacucgcGGCCGCGCggguucugCaCGcGCGCGGCu -3'
miRNA:   3'- gCGCGa--------CCGGCGCGa-------G-GUcUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 74242 1.11 0.000645
Target:  5'- gCGCGCUGGCCGCGCUCCAGACACGGCg -3'
miRNA:   3'- -GCGCGACCGGCGCGAGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 56818 0.66 0.691919
Target:  5'- uGCGCUGcGCgGCgGCcCUAGcuaGCGGCu -3'
miRNA:   3'- gCGCGAC-CGgCG-CGaGGUCug-UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 51420 0.66 0.688066
Target:  5'- aCGCGCaugguuuccggcaGGCCGCcCUCCAcGACcuuguUGGCg -3'
miRNA:   3'- -GCGCGa------------CCGGCGcGAGGU-CUGu----GCCG- -5'
24452 3' -62.1 NC_005264.1 + 72084 0.66 0.682273
Target:  5'- aCGUGCUGGUCGCGgUCgua--AUGGCc -3'
miRNA:   3'- -GCGCGACCGGCGCgAGgucugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 127842 0.66 0.672589
Target:  5'- cCGCgGC-GGCCgGCGgUCUAGAaccCGGCg -3'
miRNA:   3'- -GCG-CGaCCGG-CGCgAGGUCUgu-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 75646 0.66 0.672589
Target:  5'- uGUGCUGcaGCaggGCGUcgCCAGAUugGGUa -3'
miRNA:   3'- gCGCGAC--CGg--CGCGa-GGUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 108587 0.66 0.657036
Target:  5'- aGCGCUcccuGCgGCGCUCUAGcagccuagcgugaacGCAcCGGCc -3'
miRNA:   3'- gCGCGAc---CGgCGCGAGGUC---------------UGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 5581 0.66 0.662876
Target:  5'- aGCGcCUGGCUcaGUucCUCCAGAU-CGGCg -3'
miRNA:   3'- gCGC-GACCGG--CGc-GAGGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 7173 0.66 0.672589
Target:  5'- cCGCGCacgGGUCGgGUuccccgucguugUCUgggacaacgcgAGACACGGCg -3'
miRNA:   3'- -GCGCGa--CCGGCgCG------------AGG-----------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 4260 0.66 0.691919
Target:  5'- cCG-GCUuGCCGCGCgggaaCCGcGGgGCGGCg -3'
miRNA:   3'- -GCgCGAcCGGCGCGa----GGU-CUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 16155 0.66 0.661903
Target:  5'- uCGCGCagGGCggcaaugccgcccUGCGCggaggUCGGuCGCGGCa -3'
miRNA:   3'- -GCGCGa-CCG-------------GCGCGa----GGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 33948 0.66 0.691919
Target:  5'- gCGCGCcgGGaCCGCGC-CC-GAUAgGGg -3'
miRNA:   3'- -GCGCGa-CC-GGCGCGaGGuCUGUgCCg -5'
24452 3' -62.1 NC_005264.1 + 119294 0.66 0.672589
Target:  5'- uCGCGgUGGCUGggcaGCUgCAGACGuuGCu -3'
miRNA:   3'- -GCGCgACCGGCg---CGAgGUCUGUgcCG- -5'
24452 3' -62.1 NC_005264.1 + 100259 0.66 0.659957
Target:  5'- uCGCGC-GGucaauuuuaucgauCCGCGCagCGGGCuCGGCu -3'
miRNA:   3'- -GCGCGaCC--------------GGCGCGagGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 97659 0.66 0.653139
Target:  5'- gGCGaaaaGGCCGCgGCcauggCCAGAgAgGGCg -3'
miRNA:   3'- gCGCga--CCGGCG-CGa----GGUCUgUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 75410 0.66 0.691919
Target:  5'- uGCGC-GGCCGCGggCaguG-UACGGCg -3'
miRNA:   3'- gCGCGaCCGGCGCgaGgu-CuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 91402 0.66 0.682273
Target:  5'- aGUgGUUGGCCcuaGCGC-CgGGGCAcCGGCg -3'
miRNA:   3'- gCG-CGACCGG---CGCGaGgUCUGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.