miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 250 0.73 0.27445
Target:  5'- uGUGC-GGCgGCGCU--GGACGCGGCa -3'
miRNA:   3'- gCGCGaCCGgCGCGAggUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 791 0.68 0.527601
Target:  5'- -uUGC-GGuaGCGCUCCAG-UACGGCu -3'
miRNA:   3'- gcGCGaCCggCGCGAGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 868 0.72 0.339659
Target:  5'- gGCGUU-GCCGCGC-CCGGACguacgacuggguguACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCGaGGUCUG--------------UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 1177 0.66 0.643388
Target:  5'- gCGCGCgaugggGGUacgcaGCGgaCCGGGCguccGCGGCc -3'
miRNA:   3'- -GCGCGa-----CCGg----CGCgaGGUCUG----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 1509 0.73 0.306734
Target:  5'- aCGcCGCUGGCUGCGCcguuuuUUgGGGCcccGCGGCg -3'
miRNA:   3'- -GC-GCGACCGGCGCG------AGgUCUG---UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 2640 0.68 0.56565
Target:  5'- gCGgGCaGGuuGCGCUCU--GCAgCGGCa -3'
miRNA:   3'- -GCgCGaCCggCGCGAGGucUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 2866 0.68 0.556061
Target:  5'- cCGCuGC-GGCUGCGaucgaCCgGGGCGCGGCg -3'
miRNA:   3'- -GCG-CGaCCGGCGCga---GG-UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 2924 0.71 0.355928
Target:  5'- aCGC-UUGGCUGCgaGCUCCAGcgugcuuugagaaACGCGGCu -3'
miRNA:   3'- -GCGcGACCGGCG--CGAGGUC-------------UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 3670 0.67 0.623868
Target:  5'- gGCGaCUGGCauugGUGCggggCCuGGCGCGGa -3'
miRNA:   3'- gCGC-GACCGg---CGCGa---GGuCUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 3960 0.71 0.356681
Target:  5'- aCGUcCUGGCCGCGCcggCCGGcuuuaccgccaGCAgGGCg -3'
miRNA:   3'- -GCGcGACCGGCGCGa--GGUC-----------UGUgCCG- -5'
24452 3' -62.1 NC_005264.1 + 4260 0.66 0.691919
Target:  5'- cCG-GCUuGCCGCGCgggaaCCGcGGgGCGGCg -3'
miRNA:   3'- -GCgCGAcCGGCGCGa----GGU-CUgUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 4487 0.68 0.561808
Target:  5'- uCGCGCgagGGUCGCGagcggaggggGGACugGGCg -3'
miRNA:   3'- -GCGCGa--CCGGCGCgagg------UCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 4625 0.67 0.572387
Target:  5'- gCGCGUUcucgaaaaucgccgGGCCGC-UUCuCGGACACGaGCa -3'
miRNA:   3'- -GCGCGA--------------CCGGCGcGAG-GUCUGUGC-CG- -5'
24452 3' -62.1 NC_005264.1 + 5149 0.67 0.602424
Target:  5'- uGCGC-GGCCGCGCcgcaucgUCCgaagccuauucggAGGCccucGCGGCc -3'
miRNA:   3'- gCGCGaCCGGCGCG-------AGG-------------UCUG----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 5581 0.66 0.662876
Target:  5'- aGCGcCUGGCUcaGUucCUCCAGAU-CGGCg -3'
miRNA:   3'- gCGC-GACCGG--CGc-GAGGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 5616 0.71 0.387684
Target:  5'- aGcCGCUaucgGGCCGCGCgacgCUAGguguccccacaGCGCGGCg -3'
miRNA:   3'- gC-GCGA----CCGGCGCGa---GGUC-----------UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 5829 0.66 0.653139
Target:  5'- gGCGgUGGCCGCcacucGC-CUGGcCGCGGUu -3'
miRNA:   3'- gCGCgACCGGCG-----CGaGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 6444 0.69 0.490546
Target:  5'- gCGuCGCUGGCgGagaaCUCCucggcGGCGCGGCg -3'
miRNA:   3'- -GC-GCGACCGgCgc--GAGGu----CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 6891 0.72 0.349207
Target:  5'- cCGCGa--GCCGCGCagucCCAGcGCGCGGCu -3'
miRNA:   3'- -GCGCgacCGGCGCGa---GGUC-UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 7173 0.66 0.672589
Target:  5'- cCGCGCacgGGUCGgGUuccccgucguugUCUgggacaacgcgAGACACGGCg -3'
miRNA:   3'- -GCGCGa--CCGGCgCG------------AGG-----------UCUGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.