miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 162214 0.66 0.633629
Target:  5'- uCGCGCUGcCUGCGacgCGGGC-CGGCg -3'
miRNA:   3'- -GCGCGACcGGCGCgagGUCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 161947 0.71 0.379769
Target:  5'- cCGCGacacggGGCCGUacacccagucGUacgUCCGGGCGCGGCa -3'
miRNA:   3'- -GCGCga----CCGGCG----------CG---AGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 161187 0.66 0.653139
Target:  5'- gGCGCUGGCguaaCGC-CCGGAaagagAUGGCa -3'
miRNA:   3'- gCGCGACCGgc--GCGaGGUCUg----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 159759 0.66 0.643388
Target:  5'- aCGgGUccucGGCCGC-CgCCAGuCGCGGCg -3'
miRNA:   3'- -GCgCGa---CCGGCGcGaGGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 158252 0.74 0.250628
Target:  5'- gGCGCUGGCggggagggccUGCGUUCCcGGCuCGGCu -3'
miRNA:   3'- gCGCGACCG----------GCGCGAGGuCUGuGCCG- -5'
24452 3' -62.1 NC_005264.1 + 158131 0.67 0.57528
Target:  5'- gGCGuCUGGaCCaGCuGCUgUcguGGACGCGGCg -3'
miRNA:   3'- gCGC-GACC-GG-CG-CGAgG---UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 157796 0.67 0.594647
Target:  5'- --aGCUaGGCgGCGC-CCAcGACGCGGa -3'
miRNA:   3'- gcgCGA-CCGgCGCGaGGU-CUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 157774 0.67 0.604371
Target:  5'- aCGgGCUGGCCGCcuuGCgaccccugCCAGAagggUACGuGCc -3'
miRNA:   3'- -GCgCGACCGGCG---CGa-------GGUCU----GUGC-CG- -5'
24452 3' -62.1 NC_005264.1 + 157647 0.67 0.598534
Target:  5'- uCGCgGCUuccgaaguuucGGCCGCgagggccuccgaaagGCUUCGGACgauGCGGCg -3'
miRNA:   3'- -GCG-CGA-----------CCGGCG---------------CGAGGUCUG---UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 157205 0.68 0.562768
Target:  5'- cCGCGCUGuggggacaccuagcGUCGCGCggCCcGAUAgCGGCu -3'
miRNA:   3'- -GCGCGAC--------------CGGCGCGa-GGuCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 156284 0.67 0.627772
Target:  5'- gGUGgUGGUCGCGgugaacucgcaggguCUCCcGuACGCGGCg -3'
miRNA:   3'- gCGCgACCGGCGC---------------GAGGuC-UGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 155948 0.71 0.364266
Target:  5'- gCGCGCUGGgacugCGCgGCUCgCGGACGCucuGGCu -3'
miRNA:   3'- -GCGCGACCg----GCG-CGAG-GUCUGUG---CCG- -5'
24452 3' -62.1 NC_005264.1 + 155452 0.67 0.594647
Target:  5'- gGCGCcggGGCCGCGaUCgaAGAaaugaaaacCGCGGCg -3'
miRNA:   3'- gCGCGa--CCGGCGCgAGg-UCU---------GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 155363 0.7 0.454746
Target:  5'- aCGaaaGgaGGCCGCacgacguuCUCCGGACGCGGa -3'
miRNA:   3'- -GCg--CgaCCGGCGc-------GAGGUCUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 154595 0.69 0.47158
Target:  5'- gCGcCGCUGGCCagacuaaccGCGCUggcguacUCGGACcaGCGGCc -3'
miRNA:   3'- -GC-GCGACCGG---------CGCGA-------GGUCUG--UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 152975 0.66 0.691919
Target:  5'- gCGCGCcgGGaCCGCGC-CC-GAUAgGGg -3'
miRNA:   3'- -GCGCGa-CC-GGCGCGaGGuCUGUgCCg -5'
24452 3' -62.1 NC_005264.1 + 152296 0.66 0.633629
Target:  5'- aCGCGCgauCCGCGCcCCuGAgGgCGGCg -3'
miRNA:   3'- -GCGCGaccGGCGCGaGGuCUgU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 152241 0.66 0.653139
Target:  5'- uCGCGCgauaUGGaUCGCGgUCgCGGACuuGGCc -3'
miRNA:   3'- -GCGCG----ACC-GGCGCgAG-GUCUGugCCG- -5'
24452 3' -62.1 NC_005264.1 + 151831 0.67 0.610214
Target:  5'- aGCGUagcggaagacuggGGCCGcCGCUCCG---GCGGCg -3'
miRNA:   3'- gCGCGa------------CCGGC-GCGAGGUcugUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 150996 0.67 0.604371
Target:  5'- gGCGacgGGCCGCGUgUCC-GAUGCGcGCu -3'
miRNA:   3'- gCGCga-CCGGCGCG-AGGuCUGUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.