miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 3' -62.1 NC_005264.1 + 7869 0.69 0.508931
Target:  5'- gGgGC-GGCgucgGCGCcCCAGAUGCGGCg -3'
miRNA:   3'- gCgCGaCCGg---CGCGaGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 8065 0.66 0.643388
Target:  5'- aCGuCGC-GGCCGCag-UCGGGCACGGg -3'
miRNA:   3'- -GC-GCGaCCGGCGcgaGGUCUGUGCCg -5'
24452 3' -62.1 NC_005264.1 + 8130 0.66 0.633629
Target:  5'- uGCGCUuuaGCCuCGCUCUuGACAgCGGUa -3'
miRNA:   3'- gCGCGAc--CGGcGCGAGGuCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 8361 0.68 0.54652
Target:  5'- cCGuCGCUGaugcuuaCCG-GCgCCGGACGCGGCg -3'
miRNA:   3'- -GC-GCGACc------GGCgCGaGGUCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 10225 0.66 0.633629
Target:  5'- -uCGCUGGCCucGgGCUCaauagCGGGCGCGuGCu -3'
miRNA:   3'- gcGCGACCGG--CgCGAG-----GUCUGUGC-CG- -5'
24452 3' -62.1 NC_005264.1 + 11775 0.66 0.633629
Target:  5'- gGCGcCUGGCuCGCaCUCCGgGGCAgcccgaGGCg -3'
miRNA:   3'- gCGC-GACCG-GCGcGAGGU-CUGUg-----CCG- -5'
24452 3' -62.1 NC_005264.1 + 11832 0.68 0.527601
Target:  5'- gGCGCUGuagCGCGCaUCGGACacGCGGCc -3'
miRNA:   3'- gCGCGACcg-GCGCGaGGUCUG--UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 11970 0.69 0.472475
Target:  5'- uCGCGCcaugucuuGCCGCGCgc--GGCACGGCa -3'
miRNA:   3'- -GCGCGac------CGGCGCGagguCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 12554 0.66 0.653139
Target:  5'- gGCGUUcGCCGCGaagauaCCgcugaggggGGACACGGCc -3'
miRNA:   3'- gCGCGAcCGGCGCga----GG---------UCUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 12712 0.66 0.662876
Target:  5'- uGCGCgGGCCcucugacaUGCUCCgcccaacuGGACGCuGGCa -3'
miRNA:   3'- gCGCGaCCGGc-------GCGAGG--------UCUGUG-CCG- -5'
24452 3' -62.1 NC_005264.1 + 13423 0.67 0.614113
Target:  5'- gCGCGCgaccGCCGcCGCcgagaCGcGACGCGGCg -3'
miRNA:   3'- -GCGCGac--CGGC-GCGag---GU-CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 15193 0.66 0.653139
Target:  5'- uGCaaGCUGGCCucucuguuuGaCGC-CCuuGACGCGGCg -3'
miRNA:   3'- gCG--CGACCGG---------C-GCGaGGu-CUGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 16155 0.66 0.661903
Target:  5'- uCGCGCagGGCggcaaugccgcccUGCGCggaggUCGGuCGCGGCa -3'
miRNA:   3'- -GCGCGa-CCG-------------GCGCGa----GGUCuGUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 16485 0.67 0.57528
Target:  5'- cCGCGgUGGCCuGCGgggUCgAGGCAcgcCGGCg -3'
miRNA:   3'- -GCGCgACCGG-CGCg--AGgUCUGU---GCCG- -5'
24452 3' -62.1 NC_005264.1 + 16560 0.73 0.287026
Target:  5'- aGCGCggugGGCgGCGC-CgGGGCGgCGGCg -3'
miRNA:   3'- gCGCGa---CCGgCGCGaGgUCUGU-GCCG- -5'
24452 3' -62.1 NC_005264.1 + 16767 0.7 0.419569
Target:  5'- cCGCGCggGGgCGCGCUguucgggCCGGACGCaGUu -3'
miRNA:   3'- -GCGCGa-CCgGCGCGA-------GGUCUGUGcCG- -5'
24452 3' -62.1 NC_005264.1 + 19073 0.68 0.564689
Target:  5'- gCGCGCUucCCGCGCauagggagCCAGGacugcacCGCGGCg -3'
miRNA:   3'- -GCGCGAccGGCGCGa-------GGUCU-------GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 20151 0.69 0.490546
Target:  5'- gGCGCgccGCCgGCGC-CCaAGAuCGCGGCa -3'
miRNA:   3'- gCGCGac-CGG-CGCGaGG-UCU-GUGCCG- -5'
24452 3' -62.1 NC_005264.1 + 21190 0.72 0.341845
Target:  5'- aCGUGCUGGCCGgcCGUagUAGACucaauACGGCg -3'
miRNA:   3'- -GCGCGACCGGC--GCGagGUCUG-----UGCCG- -5'
24452 3' -62.1 NC_005264.1 + 23390 0.74 0.239369
Target:  5'- aCGC-CUGGCCGCcCUCUuGugACGGCc -3'
miRNA:   3'- -GCGcGACCGGCGcGAGGuCugUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.