Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24454 | 3' | -58.9 | NC_005264.1 | + | 25935 | 0.67 | 0.761921 |
Target: 5'- uGCACUGCAcGAcGGGCUCaCguacGCGCCCa -3' miRNA: 3'- -UGUGGCGU-CU-UUCGAG-Gac--CGCGGGg -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 144417 | 0.67 | 0.761921 |
Target: 5'- cGCGCCGagcgAGAGGGCgcgCCUG-CGCCggCCg -3' miRNA: 3'- -UGUGGCg---UCUUUCGa--GGACcGCGG--GG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 42824 | 0.66 | 0.798272 |
Target: 5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3' miRNA: 3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 104040 | 0.66 | 0.807018 |
Target: 5'- cGCGCCGCGGAAaucGGUuugccgacaUCCUcuGCGCCgaCCa -3' miRNA: 3'- -UGUGGCGUCUU---UCG---------AGGAc-CGCGG--GG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 69570 | 0.68 | 0.694375 |
Target: 5'- cCACUGaAGccGGGGC-CCUGGCGCCaCCu -3' miRNA: 3'- uGUGGCgUC--UUUCGaGGACCGCGG-GG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 46839 | 0.67 | 0.743046 |
Target: 5'- uAC-CCGaCAGAGGGCgacgcacacggCCUGGCGUUCa -3' miRNA: 3'- -UGuGGC-GUCUUUCGa----------GGACCGCGGGg -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 116941 | 0.66 | 0.774873 |
Target: 5'- -uGCCGCGGcggcgcaaauacacuGAAGUUCgUGGCGgCCg -3' miRNA: 3'- ugUGGCGUC---------------UUUCGAGgACCGCgGGg -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 32015 | 0.66 | 0.810474 |
Target: 5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3' miRNA: 3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 5449 | 0.67 | 0.743046 |
Target: 5'- uCGCCGgAGGAGG-UCCUaacCGCCCCg -3' miRNA: 3'- uGUGGCgUCUUUCgAGGAcc-GCGGGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 45393 | 0.66 | 0.81476 |
Target: 5'- gGCGCgGCaaacgauGGAGGGCggcgcCCUGcGCGCCgCg -3' miRNA: 3'- -UGUGgCG-------UCUUUCGa----GGAC-CGCGGgG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 136334 | 0.66 | 0.771196 |
Target: 5'- cCGCCGCGGcguaGAAGCUgguUC-GGCGCCgCa -3' miRNA: 3'- uGUGGCGUC----UUUCGA---GGaCCGCGGgG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 4327 | 0.67 | 0.761921 |
Target: 5'- cACAgCGCAGGccuGCcCCUGGCGgCUg -3' miRNA: 3'- -UGUgGCGUCUuu-CGaGGACCGCgGGg -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 74836 | 0.66 | 0.78938 |
Target: 5'- gGCACCaGgGGcAGGCUUCUGGaaccuCCCCg -3' miRNA: 3'- -UGUGG-CgUCuUUCGAGGACCgc---GGGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 148916 | 0.66 | 0.797389 |
Target: 5'- uGCugCgGCAGcuuuGcCUCCUGgacguucGCGCCCCg -3' miRNA: 3'- -UGugG-CGUCuuu-C-GAGGAC-------CGCGGGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 45665 | 0.66 | 0.798272 |
Target: 5'- gGCGCCaagcGCAGuGAAGCaCgUGGCGCgauCCCg -3' miRNA: 3'- -UGUGG----CGUC-UUUCGaGgACCGCG---GGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 2389 | 0.66 | 0.807018 |
Target: 5'- cGC-CCGCAG-GAGC-CC-GGCGCCggCCu -3' miRNA: 3'- -UGuGGCGUCuUUCGaGGaCCGCGG--GG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 67676 | 0.68 | 0.654483 |
Target: 5'- gGCACCuugcagggGCAGAAuAGCUCU--GCGCCCg -3' miRNA: 3'- -UGUGG--------CGUCUU-UCGAGGacCGCGGGg -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 632 | 0.68 | 0.674496 |
Target: 5'- cGCGUCGCAGGcagcgcgauagAGGCUCac-GCGCCCCc -3' miRNA: 3'- -UGUGGCGUCU-----------UUCGAGgacCGCGGGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 5209 | 0.67 | 0.723797 |
Target: 5'- cGCGCCGCGGcgaggcGAAGCUCUUcuuccGCGgCCUCg -3' miRNA: 3'- -UGUGGCGUC------UUUCGAGGAc----CGC-GGGG- -5' |
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24454 | 3' | -58.9 | NC_005264.1 | + | 138311 | 0.67 | 0.737307 |
Target: 5'- cGCACCGCAGGcAAGUuguggUCaUGGCGCgugcgcgacaaggcgCCCg -3' miRNA: 3'- -UGUGGCGUCU-UUCG-----AGgACCGCG---------------GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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